Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U586071 in the current build, Tomato 200607 #2

Unigene SGN-U315860

Unigene Basic Information

Unigene ID:	SGN-U315860
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315860
mRNA sequence:	Length: 2003 bp

>SGN-U315860 Tomato 200607 #1 (33 members)
AGACACTCTTCTTGGAATTTCCGAAAACAAAAATATAATTAAATACCAAAGAAAACGTATTGACTATATAGTTTTGCAGTAGAAAAAGAC
CCCATTATCATCAAATATTCACCAGAGCCTTAGTTTTTTCTCTGGCTTTGGGTTCAGACATGGCATCTTGCTGGAAGTTCTTATTCATAT
CCTTTGTTTTTCTTGCTGTAGTTGCTCCTAAAGTCAAAGCAGATTCTGGGTCGGTGTTGGATGATGAAGTTGAAGTGGTTAGATCGGATG
TTCCTACTTCTCAGGAATTGGAGCATCTGAAGTCCAAGATCCAATCTTTAGAATCAAACATTGAGGAGACTGCGCGAGCACTGAAAGGAA
AGGATGAGGCGATTGCAGACAAAGAGAACATAATAAAAGAAAAGTCAGAGAGGATTAAGTCATTGTCATCTGAATTGGCCTCTCTACAGA
AAAAGGGAACGCTAGATTCTGAGGAGCAAGTTGGAAAGGCTCGTGCACAAGCTGATCAGCTTGAAAAGCAGGTTGAGAGATTAAAAGAGG
AAGCTGAAATGAAAAATAAGGAGAAAAGAGACTTCAAAGCGCATATAGGTGAAACAGAGAAAAGAGTATCGGAGTTAAATTTGAAGGTCG
AAAAGCTCGAAAAGACAGTTGAGAAACAGAAGGAGAAACTGAAAAAAACTGAACGAGCTCTTAAACTTGCTGAGGAGGAAATGATTAGAG
CAAGGCTTGAAGCCACATCGAAGATGAAGGAGCTCATGGAGGTGCATGGGGCATGGCTTCCACGTTGGCTTGAAGTTCATATGACTCACT
ACAAGTCTCTTCTGGAGAAGCATTGGGAGGAGCACGGAAAACCTGCTATGAACACAATGATACAGAAGGCAGTTGAGAAGAAGGCTCAAG
CTGAGGTATGGGCTGCGCCACATATAGAAACAGTCAAAACAAAATGGATGCCTGCTGTTGAGGAACAATGGGTGGTAATGACCACTAACC
TCAAGCCACAAATGGAATTGGTGAGGACCAAAGGATTTGAGATCTATGAGACATCTAAAAGCGCCGTAACTCCACATATTGTCAAGGTTC
AGGAGCTAGCAAAACCTCACTTTCAGGAACTTAAGAAATTTAGCAAGCCATACATCGATCAAGTCGCCACTGCTACAAAACCTCATGTTG
AAAAAGTTCGTATTGCTGTAAAGCCATATAGAGATGTGGCAGTTCATCATTATGGGAAGTTCCTCGAGTCTGCAACAATATACCATAATC
AGCTGCAAGGTACAGTAGATAAAACACTGAAGAAACATGAGCTTACAAGACCTCTTGCAACAAAGGAGTTCGTCTGGTTTGCTGCTTCAG
CAGTGTTGGCTTTGCCCGTTATAATTCTGTTCAAACTTTTGTCTGGCATTTTCTGTAAAAAGGCGAAGAAACCTACTCGACATGGTCATT
CACACCATTCACGCCGTAAGTCCAAGAGGGCGCACACAGACAAGTAGGGCGAGGTAGTACATTGCTTTCATCAGAAATCAAGTATTTCAC
AGTTTGCAGATGGGTCATGTCATTGTTTCACCGGGCGCTTGGACCAAGTTCTGCATAGATTTTCCATATGTGCATAAAGCATGAATGGTG
AGGGTAGTGGGTGTGAGAAATTTACTTGTGTACTATTACTGTTTTGTTGCTTTGGATAGTGTTGGTGTTTCGTGGTCTTTCCACTACTCG
CTGTCAATGTTGCGACACTGTATTTTAGTTGTGTATTACATATCGAAGTAGCTGTATCAACATCTCCTCAGTCATATTTGATCATAGGTG
TAACGATGGAGGAAAAATTATTCGAAAACTTAAACGGAGGATAAATATAAACAGTTTACTGGAGTAAAAAAAAAAATTTGGCCCTTTTGT
GTTGAATAATTTTCTTATGTTGTTTGAACTTTGAATTGGTTTCCGATGAACGTTGAAAATGCTACAAAATTAGAAGCCATTTGTTCAAAC
TTTACCCTATAAATAGATTTATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	119702	Protein kinase PKN/PRK1 effector Spectrin repeat Apolipoprotein/apolipophorin Prefoldin	13
5	130150	Protein kinase PKN/PRK1 effector Spectrin repeat Apolipoprotein/apolipophorin Prefoldin	12

Preceding Unigenes (1)

Unigene	Build
SGN-U215000	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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