Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568698 in the current build, Tomato 200607 #2

Unigene SGN-U315908

Unigene Basic Information

Unigene ID:	SGN-U315908
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315908
mRNA sequence:	Length: 2374 bp

>SGN-U315908 Tomato 200607 #1 (10 members)
GACCCCTAAAACCTCCACAGCCTGCAAAACCTCATCTCACCCCCACGCCACCCCACCCCACCCCAACCCCTTCTCGTTACAAGATGTCTC
TCTCAATGTGTTCACCTTTATACTCTCCATTTAAGCTTTCTTTCAAGGAAGATAAAGGAAAGGTTAATTCTTGGGGATTGAGGCAAAGTT
TAGGGAAGAAGAAATTGATGGTGGTGAGAGCTGGCCCAAAGAGAATAGCTTTTGATAAAGAATGCAGAAGAGCTTTACTTTCTGGTATCA
ATAAGCTTGCTGATGCTGTTTCTGTCACTTTAGGACCTAGAGGCCGGAACGTAGTTCTCTCTGAAGGTGGGGGGCTGAAAATAATTAATG
ATGGTGTTACCATAGCTCAAGCCATAGAACTTCCAGATACAATTGAAAATGCTGGAGCGACACTTATCCAGGAGGTTGCAACTAAGACCA
ACAGGTTAGCTGGTGACGGTACAACTACTGCAATTGTTTTGGCCCGTGAGATGATCAAAGCTGGGTTATTAGCTGTTGATTTTGGCGCTA
ACCCTGTATCTATGAAGAAAGGTATGGATCAGACAGTAAGAGAGCTGGTCAATACTTTGAAGAAGAAAAGTCATCCTGTTAGAGGAAATG
ATGATATAAAAGCCGTAGCTTCAATATCAGCTGGAAATGACGAGTTCATTGGCAGTTTGATTGCTGAGGCAATTAACAAGATTGGTCCTG
ATGGAGTGATATGTATTGAGTCTTCCTCATCAGCTGAAACCTCGATCATGGTTGAAGAAGGAATGAAGGCGTTCTTTTCCTACAGATTGA
CAAGGGGTACATGTCACCTCATTTCATCAACAATCCCGAAAAATCTATAGTAGAGTTTGAAAATGCCAAAGTTCTGGTAACCGATCAAAA
GATATGTAGTGTCAAAGAAATTGTTCCTTTGCTAGAGAAGGCCACTCAACTGAGTGTGCCACTGCTGATTTTTGCTGAGGACATTACAAA
CCAAGTGCTAGAAACACTTGTCATTAACAAGATGCAAGGAATGCTCAATGTTGCTGTTGTGCAATGTCCAGGATTTCGAGATGGAAAGAA
AGGTGTATTACAAGACATTTGCCATGTTGACAGGTGCTGATTTTCTTTCTGGAGACTTAGGCCTGACTCTTGAAAGTGCAACCTCCGATC
AGCTTGGTATTGCTCGGAAAATAACAATAACAAGTAACTCTACAACCATCGTGGCTCACCCCTCGACAAAAGCTGAAATACAAGCCAGAA
TAATGCAGATAAAGAAGGATCTTGCAGAAACAGATAATAAATCTATATCAGAGAAGCTTTCACAAAGAATAGCAAAACTCTCTGGTGGTG
TGGCTATATTGAAGGTAGGAGCACATACTGAAACAGAACTGGAAGACCGAAAGCTGAGAATTGAGGATGCAAAAAGTGCCACATTTGCTG
CCATGGATGAAGGAATAGTGCCTGGTGGTGGTGCCACTTTTATTCATCTTTCTGAACAAATACCCTTGATAAAAGAATCTTTTCAGGATC
CAGATGAGCAGATCGGTGCTGACATAATAGGAACGGCACTTCTTGCACCAGCAAAGTTAATAGCTGCAAATGCAGGAGTGGATGGGGATA
CAGTTGTGGAAAAAGTTAGAGGTTGTGACTGGAAAATGGGGTATAACGCCATGACTGGAAGATATGAAGACCTTCTTGCTTCTGGTATTA
TTGATCCTTGCCGTGTTTCACGATGTGCCCTTCAGAATGCTGTCTCCGTTGCCGGTATAGTCCTAACTACTCAAGCAATAATGGTAGAGA
AAACCAAGGAGCCCAAACCCCTTGTTCCTTATGTTCCTGGTATAACTCCTTAAAAGTTCGAAGGATAAACCTTGGTCGAAGCACTAGACA
AGGAAGTTTCAATTCATGATGTTGTCTTACAAGGGAAGTTCTGGTTTGCCACTTTGACTTGGATGAGATATTTAGAAGAGTTGAAAATCT
TGTGTCCAGCTGAAACTAGAGATTGTCTCATTGCAGATAAAATTGCTTCCAGACACGAGCATTTTCTAGCCTCGACTCTTGGTAGGAAAA
TATAGTTAATCCTCAAGCATACAGGAACTGTTTTGATCCCAATAGCACAGTCATCTTGTTTCAGTAGTACTTGTTCCTGCAGGCGGAGGA
TTGTCATTTTCAGGTTTCTATTAGTATTTTGATCAGTGAGATACGATTATACCAAATGTCTTGAAGCAAAGATGAATAGTTTCTATTAGT
ACTAAACTGCTGCATGTTGTTGTATGTTTGATATGAAAGGATATGAAATTAGAATCCCATATCATGAATAGGGCTAATATCAAAATTTCA
ACTTTTTAGTTTTTTACACCCCAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (1)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

Preceding Unigenes (3)

Unigene	Build
SGN-U215150	Lycopersicon Combined #3
SGN-U222873	Lycopersicon Combined #3
SGN-U237968	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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