Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576908 in the current build, Tomato 200607 #2

Unigene SGN-U316249

Unigene Basic Information

Unigene ID:	SGN-U316249
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316249
mRNA sequence:	Length: 1838 bp

>SGN-U316249 Tomato 200607 #1 (29 members)
GTCTTCTCAAAAAAATGGAGTCGGAGAAACCCCAAAATCCATCTCCAATGGAACCACAAGAAGAAGGCAGCAACAAAATCTCCAAAAAAG
AAGCCGCCAAGCTGGAGCGTCAGCGCCGCCGTCAAGAGGCAGCCGCCGCCGCCGCCGCCACTGCTGTCTCCACTGTCTCCATTGAAGAAT
CTGATCCACTTTCCGGAAACTACGGTGACGTAGAGCTGAACGATCTGCAATCTAAGGCCGTGACGGGTCGAAAGTGGACTGAAGTTGGGT
CCATCGCGCCAGAAATGAAGGACCGGGTGGTCTTGGTTCGGGGGAGGGTACAGACGATTCGTCCTGTTGGGAAAAAGATAGCTTTTGTGG
TTGTGAGGGAACGAGGATTTACGGTGCAGTGTGTATTGACTGTGAAGCCTGAATTGGTTAGTTCACAAATGGTGAAATATGCTACTAGTT
TGAGCAAAGAGTCCATTATTGATGTTGAAGGTGTTGTTACAATACCAGAGAAGCCAATTACTGGTGCCACTCAACAACAGGTGGAAGTTC
AAATAAGCAAACTTTATTGTGTCAACAGGGCTGTGCCCACTCTACCGATTAATATTGAGGATGCTGCTAGAAGCGAGGTGGAGATAGAAC
AAGCTTTAGAGAAAGGAGAGCAGCTTGTTCGTGTAAATCAGGATACTCGCTTAAACTTCAGAATACTAGACATGCGCACACCTGCAAATC
AAGGAATCTTCCGCATTCAATGTCAAATCGAAAATATATTCAGGCAGTTTTTGCTCTCTGAAGGATTTGTAGGAATCCATACTCCAAAAT
TGATTGGAGGGTCTAGTGAAGGAGGTTCAGCTGTTTTCCGATTAGATTATAAAGGTCAACCTGCATGTCTGGCGCAGTCACCTCAACTTC
ACAAACAAATGGCAATATGTGGTGATTTTGGCCGTGTATTTGAAGTAGGCCCCGTCTTTAGGGCAGAAGATTCTTTTACACATAGACATC
TGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATCAAGGAACATTATTCAGAGGTCATGGATATTGTTGACCGCTTATTTGTGGCCA
TGTTTGATAGCTTGAATGAGAAATGCAAAAAGGAACTTGAAGCCGTTGGAAAGCAATACCCTTTTGAACCTCTGAAGTATTTGCGAAAGA
CCTTACGACTTACATTTGCTGAGGGGATTCAAATGCTAAAGGAAGCTGGTGTTGAAGTTGATCCTCTTGGGGACCTAAATACAGAATCAG
AAAGAAAGCTTGGGCAGCTTGTTGCGGAGAAGTATGGAACTGAATTCTATATACTTCACAAGTACCCACAGGCTGTTCGTCCATTCTATA
CCATGCCTTGTCATGACAATCCATCTTACAGCAATTCTTTTGATGTCTTTATCAGAGGGGAGGAAATTATCTCAGGAGCTCAGCGTGTCC
ATGTTCCTGAACTCTTGGAAAAACGTGCCGGAGAATGTGGAATTGATGTGAAGACAATATCAACATACATTGATTCTTTCCGGTATGGTG
CACCTCCCCATGGTGGATTTGGAGTCGGATTGGAGCGTGTGGTGATGCTTTTCTGTGCTCTCAATAACATTCGCAAGACATCACTTTTCC
CTCGCGACCCACAAAGGATTGTCCCATGATCTGTTACTTTTTTGAACCTTTTTTCTGTTATTGTTTCAGTTAAGCTGGTATTTGTTGATG
TCCTAGCATGAAAACACTAAGTAGGGGACGGATTGTTTTTAAATCTCTCCATTCTGGGGTTAGCCAAGAAACATGAATTTCAGAGTTTAT
ATACGATTACGTATGATCATCTAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	121237	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Aspartyl-tRNA synthetase archea/euk type - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7
5	131472	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Aspartyl-tRNA synthetase archea/euk type - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U215061	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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