Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576717 in the current build, Tomato 200607 #2

Unigene SGN-U316872

Unigene Basic Information

Unigene ID:	SGN-U316872
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316872
mRNA sequence:	Length: 1673 bp

>SGN-U316872 Tomato 200607 #1 (24 members)
TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATT
GGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGA
TTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGAT
CTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGAT
GATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAA
GGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAA
GGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATC
CACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTT
CATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTT
AGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAAT
AACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAG
AGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGC
ATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATT
CAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACA
CAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTT
GAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCT
TTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAA
TAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAAAGAGTTATA
TTTTAATGCAACTGAATGTATCATGTGCCAACATTNNANAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
mca1	metacaspase 1

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101897	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	29
2	119459	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	15
5	129981	Peptidase C14 caspase catalytic - Biological Process: proteolysis (GO:0006508) - Molecular Function: caspase activity (GO:0030693)	13

Preceding Unigenes (3)

Unigene	Build
SGN-U218602	Lycopersicon Combined #3
SGN-U222482	Lycopersicon Combined #3
SGN-U234023	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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