Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567948 in the current build, Tomato 200607 #2

Unigene SGN-U317261

Unigene Basic Information

Unigene ID:	SGN-U317261
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317261
mRNA sequence:	Length: 1317 bp

>SGN-U317261 Tomato 200607 #1 (21 members)
CTCTCCTTGTACCGGCGAGCAAAATGACGACGTCGTTCGGAACTACGGCGACACCGGCAGCATCTGCTTCACCGGCGGTATTTCCGGCCA
AAAATGCCCCGAAATCCTTGACTTTGTTACCTTTCTGCCATCATCGCCATTACAATCATTTGCGTTCCAAATTATCTATCACGCCCAAAC
TCCGATTCTCCTGTAAGGGTCTACAATCTAATTGGAATCATTCAGTCGTAACTAGAGCCCAATCGAATGAGGTTGCTCTTGGTGGATCTT
CAAATAATGCAGCTACTCCTATCACTCAGTCAGAAGAGGTGAAATCACCAAGTGAGACTTCATCTGCAACTTCGGTATCAGAGGAAGCAA
TATCTAACTTTATTAGCCAAGTTTCAAGCCTTGTCAAGCTAGTTGATTCTAGGGATGTTGTGGAGCTGCAGTTAAAACAATTTGATTGTG
AAATTCTAATCCGTAAGAAGGAGGCACTACCACAACCACCTGCTCCTGTTCCTGCACAAGCTCCATTTATACAATCATATCATGTACCAT
CTATACAATCTAATGCATCTCCTCCACCTGCACCTGCACCTTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGT
CAGCTGATTCATCTCTTCCTCCGCTCAAATCCCCAATGGCAGGGACATTCTATAGAAGTCCAGCACCCGGTGAACCAGCATTTGTGAAGG
TCGGAGACAAAGTGCAGAAGGGTCAAGTTCTTTGCATTATTGAAGCGATGAAGTTGATGAACGAAATAGAGGCTGATCGATCAGGAACCA
TCGTTGAGGTTGTTGCTGAAGATGGAAAACCTGTCAGTGTTGATACTCCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCC
GGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTG
CAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTG
GCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCAT
CGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAAAAAAAAA
GTTTCAATTTACTAGACGCAACATAACTTGGTACTAACAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
bccp1	biotin carboxylase carrier

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102003	Single hybrid motif	25
2	119872	Biotin/lipoyl attachment Single hybrid motif Acetyl-CoA biotin carboxyl carrier - Molecular Function: acetyl-CoA carboxylase activity (GO:0003989) - Biological Process: fatty acid biosynthesis (GO:0006633) - Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) Biotin-binding site - Molecular Function: biotin binding (GO:0009374)	12
5	130193	Biotin/lipoyl attachment Single hybrid motif Acetyl-CoA biotin carboxyl carrier - Molecular Function: acetyl-CoA carboxylase activity (GO:0003989) - Biological Process: fatty acid biosynthesis (GO:0006633) - Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) Biotin-binding site - Molecular Function: biotin binding (GO:0009374)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U216107	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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