Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579937 and SGN-U590081 in the current build, Tomato 200607 #2

Unigene SGN-U317417

Unigene Basic Information

Unigene ID:	SGN-U317417
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317417
mRNA sequence:	Length: 1013 bp

>SGN-U317417 Tomato 200607 #1 (21 members)
CGGCCAAATCGGCCGAATTCCCATGGGGATCCGCTGACGGTGACTTTCCCAAGAGAACACAATCAAAGGGTTTTAGGGTTTCTTTTTCTT
TGTGAGCGAAAAAAATGGCTGATGAGGGTTGTGAGAGGCTCAAGGGAACTGTCAAGTGGTTTAGTGACCAGAAGGGGTTTGGGTTCATCA
CCCCCGCCGATGGCTCTGAAGATCTGTTTGTACACCAGTCTGGTATCAGATCTGAAGGATTCAGAAGCCTAGCTGAAGGTGAGGATGTTG
AGTATCAGATTGAGTCTGGCTCAGATGGTAGGGCTAAGGCTTCCGATGTTACTGGACCTAATGAAGCGGCTGTTAAAGGAGGTTCCCGCA
GCGGTGGAGGACGTGATGGAGGTGGTTACGGCGGAGGCGGTGGTTACGGTGGAGGCGGAGGTTACGGTGGTGGCCGAGGAGGAAATCGTG
GTTATGGAGGTGGTGACAGTGGCTACGGAGGAGGTAGCCGAGGTGGTGGCGGCTACGGAGGCGGTGGAGGCTATGGAGGAGGTGGCGGAG
GCGGCGGAGGCTGCTTCAAATGTGGGGAATCTGGGCATTTCGCTAGAGAATGTCCACAGGATGGTGGCAGTGGCGGAGGCGGTGGAGGTA
GATATTCTGGTGGTGGAGGTGGTAGGTACTCCGGTGGCGGCGGCGGCGGCGGCGGAGGCTGCTACAAATGCGGCGAAGAAGGTCATTTCG
CCCGCGAGTGCACCAGCGGCGGCCATTGATCGTTATCTCTATGTTTGTTTTTGCTGTTTTTATGTTTCCGGTGCTTATTGACACTGTTAG
TCTTGAATGATTATCTCTAGTATTGCTTGTTTTTATCTTATTTTGTACTGGTGGTTGATGGTAGTTAGTAGTATCATGCTTTTTGTAATG
GGGAGTTATAGTTTTGTTGGTGCGACAATGAATACTCTCTGTACATGTCGACATTCATGTTTTCGAAAGCAATATCAATTATTATGCTGC
TAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (2)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	121594	Zinc finger CCHC-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) Cold-shock protein DNA-binding - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup Cold shock protein - Molecular Function: nucleic acid binding (GO:0003676)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U221734	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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