Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568118 in the current build, Tomato 200607 #2

Unigene SGN-U317938

Unigene Basic Information

Unigene ID:	SGN-U317938
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317938
mRNA sequence:	Length: 1088 bp

>SGN-U317938 Tomato 200607 #1 (18 members)
GCGAGAGTGAATAATGCCGTCTTCTATATCCTTACATTCTGTGTCAGCTATAGCGTATGGTTTCCGCTACCGTGCGCCTTTAAAGCACGC
TTGTTTATTATACGCCCACCATCTCCATAGTTTTCTTCGCCAAAAATCTCCTCTCTTCTCTTCATCCTTTTGCCGTGTCCTAAATCCATA
TTCCTTCACGGGGAACTCTCGATTCTCTCGAATGGAGCAATTTTGGAGTGGAAGTGCCGTTAACAGAAACAAGGGAATGACTGAGCAGTT
GCGAAGATGTGGAGTCATAAAATCACAGAAAGTAATAGAAATAATGGAAACTGTAGATAGGGGTTTGTTTGTACCTGAGGGTACTCCTGC
TTACGTTGATAGCCCCATGAGTATAGGTTACAATGCCACTATCTCAGCACCTCATATGCATGCTATGTGTCTTGAATTATTGGAGGATAG
GTTGCAGCCTGGCATGCATGCTCTTGATGTTGGTTCAGGAACGGGGTATCTCACAGCATGTTTTGCTCTGATGGTTGGACCACAAGGTCG
AGTTGTTGGTGTGGAACATATACCAGAGTTGGTTGCGTGGTCAATCAAGAATGTTGAAAAGAGTGCAGCAGCTCCTTTATTAAAAGAAGG
GTCCCTCTCATTGCATGTTGGTGACGGGAGGAAGGGTTGGGCAGAGCACGCACCTTATGACGCTATTCACGTTGGAGCAGCTGCAGCTGA
TGTTCCACAGGACCTCATTGACCAGTTAAAGCCCGGGGGAAGGATGGTAATTCCAGTGGGTACTTTTTTTCAAGACCTCAGGGTTATAGA
CAAAAAATTGGATGGTTCAATAAGTGTTCGAAGTGAGACTTCTGTCCGTTATGTTCCACTGACTAGTCGAGAAGCGCAGATAAATGGCAC
CGACTAGTTGAGAGAGCACAGATAAAGGGCACATAAAGCTGGTTGTTTCTGGCGATGGTGTTCTTGGTTCCCCTCTTGCGTGGCACTCCA
GTTTGATGTTTTGTACAGTTTCACACCTTTAGCCTGTGAAGAACGAACGATCTAAATGGTTCTGTATTTATTTCCGTGCAAATTCTCTCC
TGCTCTAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	104425	Protein-L-isoaspartate(D-aspartate) O-methyltransferase - Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719) - Biological Process: protein modification (GO:0006464) SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	4
2	123537	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Protein-L-isoaspartate(D-aspartate) O-methyltransferase - Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719) - Biological Process: protein modification (GO:0006464)	4
5	133720	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Protein-L-isoaspartate(D-aspartate) O-methyltransferase - Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719) - Biological Process: protein modification (GO:0006464)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U218375	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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