Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571803 in the current build, Tomato 200607 #2

Unigene SGN-U318212

Unigene Basic Information

Unigene ID:	SGN-U318212
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318212
mRNA sequence:	Length: 2024 bp

>SGN-U318212 Tomato 200607 #1 (16 members)
GAACCCTTGCTCAGTTTTCCACTTTCACTGCTTAAACCTTTTTCCGGCGCCGCCACCGTCAACGGCATTCTACTTTCAGTTGTTGAGCTT
CAGCTTTTGGGTTTCAGCTTGGTATCTCCAATTTCTTTCTAATGGCGATTGACAAACTCTTCAAAGATGAAGCCACTGAGGAAAAGGGTG
AGCGAGCTAGGATGGCATCCTTTATCGGAGCAATGGCAATTGCTGACTTGGTAAAGACAACCTTAGGACCTAAGGGAATGGATAAAATTC
TGCAATCAACAGGCAGAGGACACAGTGTTACAGTCACCAATGATGGTGCAACAATTTTGAAGTCCCTTCATATAGATAATCCAGCTGCCA
AGGTCCTTGTCGATATCTCCAAGGTACAGGATGAGGAAGTTGGTGATGGGACAACTTCAGTTGTCGTTTTGGCTGGAGAACTTTTGAGGG
AGGCAGAGAAGCTGGTAAACGCAAAAATTCATCCAATGACAATTATAGCAGGTTTCCGGATGGCATCTGAGTGCGCGCGCAATGTTCTGG
AGCAGAAGGTCGTAGATAACAAGCAGGATGCAGAGAAATTCAGATCAGACTTGATGAATATTGCAAGGACTACTTTGAGCTCAAAAATCT
TGTCTCAGGACAAGGAGCATTTTGCAAAACTGGCTGTTGATGCGGTTATGAGGTTAAAGGGAAGTACCAATCTTGAAGCAATTCAGATAA
TTAAGAAACCTGGAGGGTCATTGAAGGATTCATTTTTAGATGAAGGGTTTATTTTGGACAAAAAGATTGGGGTTGGCCAACCAAAACGCA
TAGAAAATGCTAAGATTTTGGTGGCAAATACTGCTATGGATACAGATAAAGTGAAGATATATGGTGCACGTGTTCGAGTTGACTCAATGG
CCAAGGTTGCTGATCTAGAAGCAGCTGAAAAGGAAAAAATGAGAGAGAAGGTGCAAAAGATCATTAGTCATGGAATAAATTGCTTTGTTA
ACCGACAGCTGATCTACAATTTCCCAGAGGAACTATTTGCTGATGCTGGGATACTTGCAATAGAGCATGCTGACTTTGATGGTATTGAGC
GGTTGGGCTTAGTTACTGGGGGAGAAATTGCATCAACCTTTGATAACCCAGAGTCTGTCAAACTTGGCCACTGCAAACTTATCGAGGAGA
TCATGATTGGCGAAGATAAGCTGATCCACTTCTCTGGGGTTGCAATGGGACAGGCATGTACAATTGTTCTGAGAGGTGCAAGCCCTCATG
TACTGGATGAAGCTGAAAGATCTCTGCACGATGCATTGTGTGTACTATCTCAGACGGTAAATGACAGCAGGGTTCTACTTGGAGGTGGAT
GGCCCGAGATGGTGATGGCTAAGGCGGTTGATGAACTAGCTAAGAAGACTCCAGGTAAAAGGTCTCATGCAATTGAGGCTTTCACCCGTG
CACTTCTGGCAATTCCAACCACCATTGCCGACAATGCTGGGTTAGACAGTGCTGAGCTGATTGCTCAGCTTCGTGCTGAACACCACAAGG
ACGAAAGTAATGCAGGAATTGATGTCATCTCTGGATCTGTCGGAGATATGTCAGAGCTAGGAATATCCGAATCATTCAAAGTCAAACAGG
CAGTATTGCTCTCTGCCACTGAGGCTGCTGAGATGATCCTAAGGGTTGACGAGATCATCACTTGCGCCCCACGGAGGAGGGAGGGAATGT
AAAAAACACACTATTAGTCATGTTTAAGCTGTTGAGACGACTCGTATTATTTATGGTTTGAGAATTTGAGGTGTTAGGTGTTGGAAGTCG
TAAACGAACCAAAATGATAGATTGCTATTTGGAACCATGCTAAAATTCACTATGTTGAGTAGTTTATTTTGTTTTTGTCTTTTGAGAAAA
TGTTTTGGTTTGTTTTTCATCATGCAAGTTTTGAGTGAATGCATTGTTCTATTACTTTAGACATGTACTTGTTTTGTAAACACTAGTGAT
TTTTGTCATTTCAAGCATTAAAGAGTTGGTTGCAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	131519	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) T-complex protein 1 beta subunit Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1	7

Preceding Unigenes (3)

Unigene	Build
SGN-U221520	Lycopersicon Combined #3
SGN-U222624	Lycopersicon Combined #3
SGN-U234656	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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