Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580101 in the current build, Tomato 200607 #2

Unigene SGN-U318447

Unigene Basic Information

Unigene ID:	SGN-U318447
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318447
mRNA sequence:	Length: 2718 bp

>SGN-U318447 Tomato 200607 #1 (8 members)
GGCACGAGCCACCTCTAGCTCCGGCGACCTCGTCGCGTATCTCTTTTTCCGGCGATATTCAGTTTGGTGTTGATAAGATAAGAGTGATTC
ATTAAGGAGTTTGTTCATCATGGATTGTAACTGCTTCGATCCACTGTTGCCTGCCGATGAGTTGTTAATGAAGTATCAGTACATTTCTGA
TTTTTTCATTGCAGTTGCTTATTTTTCCATCCCAATCGAACTGGTATACTTTGTCCAGAAATCAGCTGTTTTTCCGTATCGATGGGTGCT
TGTGCAGTTTGGTGCTTTCATAGTTCTTTGTGGAGCAACACACCTTATCAATTTGTGGACTTCTACTCCTCATACAAGGACTGTGGCAAT
GGTGATGACTACGGCGAAGTTCTCCACTGCTGCGGTATCATGTGCAACTGCTGTCATGCTTGTGCACATTATTCCGGATTTATTAAGTGT
CAAAACTAGGGAGCTATTCTTGAAAAACAAAGCGGCGGAACTTGATCGTGAAATGGGTCTTATTCGGACACAGGAGGAGACGGGTAGATA
TGTTAGAATGCTAACACATGAAATCAGAAGTACTCTGGATAGACATACTATTTTGAAGACTACACTTGTTGAACTTGGAAGAGCATTGCA
ACTGGAAGAGTGTGCTTTGTGGATGCCGACTCGAACTGGAGTGGAGCTTCAACTTTCTTACACTTTACATCATCAAAATCCAGTTGGATT
TACAGTACCTATACAACTCCCTGTAATTAATCAAGTTTTCAGTGCAAATTGTGCTGTTAAAATTTCACCTAATTCTGCCGTTGCAAGGCT
TCGACCTACCCGGAAGTACATTCCAGGTGAGGTGGTTGCTGTTAGGGTCCCACTTTTGCATCTCTCAAATTTTCAGACTAATGATTGGCC
CGAACTCTCGCCGAAGAGCTATGCTTTGATGGTTTTGATGCTTCCTTCAAATAGTGCAAGACAATGGCATGTCCATGAATTGGAGCTTGT
TGATGTGGTAGCCGATCAGGTAGCTGTTGCTCTCTCCCATGCTGCCATCTTGGAGGAATCAATGAGGGCTCGAGATCTTCTTATTGAGCA
GAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAACAGCTGTTCGTGCGCGTAATGATTTCCTGGGTGTTATGAATCATGAAATGAG
AACTCCCATGCATGCGGTGGTTGCACTTTCATCTTTGCTGCAAGAAAGTGAACTGATACCCGAGCAGCGTCTGATGGTGGAAACAATCCT
AAAGAGCAGCAACCTTTTAGCAACTCTCATTAATGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGCCTTCAACTTGATGTTGGGAC
TTTCAATCTTCATGCTCTCTTCAGAGAGGTCCTTAACTTAATCAAGCCTGTTGCAGCTGTAAAGAAGCTGTTTGTCACGCTTAGTTTGTC
TTCGGATTTTCCGGAAGTTGCTATTGGAGATGAAAAACGGCTCATGCAAATTCTTTTAAATGTTGTTGGCAATGCTGTAAAATTCTCAAA
AGAAGGCAGTGTGTCAGTTTCTGCAGTTAATGCAAAATCAGAATCTCTAATAGATCCTAGAGCTCCAGAGTTTTTTCCTGTGCAGAGTGA
GAATCACTTCTATTTGCGTGTACAGGTAAAAGATACAGGATCAGGCATTAATCCTCAGGATTTCCCCAAGTTGTTCTGTAAATTTGCGCA
AAACCAGGAACCAGCAACTAAAAATTCTGCTGGCACTGGACTTGGCCTTGCAATTTGTAAGAGGTTTGTAAATCTTATGGAAGGACACAT
TTGGATTGAAAGTGAAGGTGTCGGGAAGGGTTCTACTGCTATCTTTATTGTTAAACTTGGCATTCCTGGTCGCTTAAATGAGTCAAAGCT
TCCCTTTACGGCCGGATTGCCTGCAAATCACATGCAGATGACTTTTCAAGGACTAAAGGTCTTGGTTATGGATGATAATGGGTTTAGCAG
GATGGTAACGAAGAGTCTGCTAGTGCATCTAGGGTGCGATGTAACAACCATTGGCTCCGGTGATGAGTGCTTGAGAATCCTTACTCGGGA
ACACAAAGTACTAATCATGGACGCAAGTATAACAGGTATGAACTGTTATGATGTTGCCGTCAGTGTACATGAGAAATTTGGAAAACGTCT
CGAGAGGCCACTTATTGTGGCACTAACTGGGAACACTGACCAAGTGACAAAAGAAAACTGCTTGAGAGTTGGAATGGATGGAGTTATTCT
GAAACCTGTTTCAATTGATAAAATGAGAAGTGTTTTATCCGGGCTTTTAGAGCACGGAACTGTTCTTTAATCCCAGTAAACCAAAATTGT
CTCAAGACTCGTACTCTTGAGTCTCAGAAATCAGAATACAAGTGTGTCGTAAATACAATCTCCGATTTTTCGCAAAAACAACGATTTGTT
CACGATGATGATGCAGTATGGCTGATTGCAGTTTCATTTATCTTATGTAATCCTCAGTAGCTTTGTATAAAGTAGTTAGGTCTACAATCT
ATGCATATATATAGGACTAGTTAATGTCTTTCCTGTAAGGTTTGATGTAAGAAAAATACAATGACAGTCGAATTCAGCTCGAGTTTTAAT
TTGTTTGTCTTAGTGTTCTTTTTAAAATATTGGCAATTAACACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
etr2	ethylene receptor 2	ethylene signaling

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 11 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P247668 (747 Aa)

DKSDSLRSLFIMDCNCFDPLLPADELLMKYQYISDFFIAVAYFSIPIELVYFVQKSAVFPYRWVLVQFGAFIVLCGATHLINLWTSTPHT
RTVAMVMTTAKFSTAAVSCATAVMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRYVRMLTHEIRSTLDRHTILKTTLVEL
GRALQLEECALWMPTRTGVELQLSYTLHHQNPVGFTVPIQLPVINQVFSANCAVKISPNSAVARLRPTRKYIPGEVVAVRVPLLHLSNFQ
TNDWPELSPKSYALMVLMLPSNSARQWHVHELELVDVVADQVAVALSHAAILEESMRARDLLIEQNVALDLARREAETAVRARNDFLGVM
NHEMRTPMHAVVALSSLLQESELIPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIKPVAAVKKLFV
TLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSKEGSVSVSAVNAKSESLIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPKLF
CKFAQNQEPATKNSAGTGLGLAICKRFVNLMEGHIWIESEGVGKGSTAIFIVKLGIPGRLNESKLPFTAGLPANHMQMTFQGLKVLVMDD
NGFSRMVTKSLLVHLGCDVTTIGSGDECLRILTREHKVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVGM
DGVILKPVSIDKMRSVLSGLLEHGTVL

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P121224 (781 Aa)

MDCNCFDPLLPADELLMKYQYISDFFIAVAYFSIPIELVYFVQKSAVFPYRWVLVQFGAFIVLCGATHLINLWTSTPHTRTVAMVMTTAK
FSTAAVSCATAVMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRYVRMLTHEIRSTLDRHTILKTTLVELGRALQLEECAL
WMPTRTGVELQLSYTLHHQNPVGFTVPIQLPVINQVFSANCAVKISPNSAVARLRPTRKYIPGEVVAVRVPLLHLSNFQTNDWPELSPKS
YALMVLMLPSNSARQWHVHELELVDVVADQVAVALSHAAILEESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAV
VALSSLLQESELIPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIKPVAAVKKLFVTLSLSSDFPEV
AIGDEKRLMQILLNVVGNAVKFSKEGSVSVSAVNAKSESLIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPKLFCKFAQNQEPAT
KNSAGTGLGLAICKRFVNLMEGHIWIESEGVGKGSTAIFIVKLGIPGRLNESKLPFTAGLPANHMQMTFQGLKVLVMDDNGFSRMVTKSL
LVHLGCDVTTIGSGDECLRILTREHKVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVGMDGVILKPVSID
KMRSVLSGLLEHGTVLXIPVNQNCLKTRTLESQKSEYKCVVNTISDFSQKQRFVHDDDAVW

SignalP predicts non-secretion with a score of 0.119

IPR001093 IMP dehydrogenase/GMP reductase
IPR003594 ATP-binding region, ATPase-like
IPR001789 Response regulator receiver
IPR003661 Histidine kinase A, N-terminal
IPR004358 Histidine kinase related protein, C-terminal
IPR003018 GAF

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129816	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase homodimeric Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301)	15

Preceding Unigenes (2)

Unigene	Build
SGN-U222200	Lycopersicon Combined #3
SGN-U229641	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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