Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578092 in the current build, Tomato 200607 #2

Unigene SGN-U318448

Unigene Basic Information

Unigene ID:	SGN-U318448
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318448
mRNA sequence:	Length: 2704 bp

>SGN-U318448 Tomato 200607 #1 (8 members)
GAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGA
TGGGATCTCTTCTCCGGATGAATCGCCTTTTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACT
TGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGT
CTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACAT
TTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTCCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTG
TCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTA
TTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTA
CACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACA
CTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAA
TATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATC
TGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGAC
AATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAA
TGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATT
TCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAG
AGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGG
ATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAGGTCCATAGCTTAATCAAGCCTATTGCATCTGTGA
AAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACG
TTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAG
CCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAGATAAAAGATACGGGGATAGGAATTACACCACAGGATA
TTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGA
GGTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCA
TTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTT
TGGTGATGGATGAGAATGGTGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCG
ATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAG
TGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCA
TGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTG
TACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCG
TCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAG
AAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACT
TGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAAATAGATTATTATGTGTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
etr1	ethylene receptor 1	ethylene signaling

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 11 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P247669 (783 Aa)

ANSIVSLSLLIIINLHHFFSPQFFFFLATMGSLLRMNRLLSSIVESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKS
AVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHTRNVAIVMTTPKALTALVSCITALMLVHIIPDLLSVKTRELFLKKKAAQLDREMGII
RTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKI
SPNSPVARLRPAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESM
RARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLED
GSLQLDIGTFNLHALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRA
PEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQALATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGI
PGRANESKLPFVTKLPANHTQMSFQGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTHEHKVVIMDVSMQGIDCYEVAVV
IHERFGKRHGRPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVYKMRSVLSELLEHGVVLES

SignalP predicts non-secretion with a score of 0.384

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P121225 (754 Aa)

MGSLLRMNRLLSSIVESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWT
FNMHTRNVAIVMTTPKALTALVSCITALMLVHIIPDLLSVKTRELFLKKKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLDRHTILKT
TLVELGRTLALEECALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKISPNSPVARLRPAGKYMPGEVVAVRVPLLH
LSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAEMAVRARND
FLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIKPIASV
KKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQD
IPNLFSKFTQSQALATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGIPGRANESKLPFVTKLPANHTQMSFQGLKV
LVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTHEHKVVIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENC
MRVGMDGVILKPVSVYKMRSVLSELLEHGVVLES

SignalP predicts non-secretion with a score of 0.416

IPR003594 ATP-binding region, ATPase-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR003018 GAF
IPR004358 Histidine kinase related protein, C-terminal
IPR003661 Histidine kinase A, N-terminal
IPR001789 Response regulator receiver

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129816	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase homodimeric Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301)	15

Preceding Unigenes (2)

Unigene	Build
SGN-U222201	Lycopersicon Combined #3
SGN-U223612	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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