Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567072 in the current build, Tomato 200607 #2

Unigene SGN-U320406

Unigene Basic Information

Unigene ID:	SGN-U320406
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320406
mRNA sequence:	Length: 1706 bp

>SGN-U320406 Tomato 200607 #1 (11 members)
TTCTTAGCTCTTCTCTCCTCTAGGAGGAGAAGTTCAACCCTCCTTTGGTTGAAAAATTCACAAAAGAAATCTTTTTTTGCTTGATTGAAT
CAAGAACTGAGTTGGGGTTTGTATAAAGTTTGTATCTTTATGGAGAGGATAATTGGAGAGAAGTACAAGTTAGGTAGAAAGATTGGAAGC
GGGTCTTTTGGGGTTATATATCTTGCTACCCACATCGAAACTTTTGAGATTGTTGCTGTTAAAATTGAAAATAGGCAGACAAGACACCCT
CAGTTGCTTTATGAGGCAAAGCTGTACACTATACTTCAGGGAGGAAGTGGTATTCCTAATATAAAATGGCGTGGGGTTGATGGGAATGAC
AGTGTCCTCATTATTGATTTGCTTGGTCCCAGTCTTGAAGACCTCGTTGTACACTGTGGGAGGAAATTCTCGCTGAAAACTGTTCTAATG
TTGGCTGATCAGACGATTACGAGAATAGAGTATTTGCATTCAAAAGGATTTCTACATAGAGACATAAAACCTGATAACTTCCTCATGGGT
CTTGGCAGGAAGGCAAACCAGGTCTATGTTATTGATTTTGGACTTGCAAAAAGATATCGTGACCCCACCACAAGCCGTCATATTCCTTAC
AGAGAGAACAAGAACTTGACAGGGACAGCAAGGTATGCCAGTTGCAATACACATTTGGGAATAGAGCAAAGTCGGAGGGATGATCTGGAA
TCTCTTGGCTACGTTCTTTTATATTTCTTGAGAGGCAGCCTTCCATGGCAGGGTTTAAAAGCTGATACAAAGAAGCAAAAATATGACAAG
ATCCGTGAGAAAAAAGTATCAACAACAATTGAGGTTTTATGCAAATCTCTTCCAGTGGAGTTTGCTTCATACTTGCATTATTGTCACTCT
TTAACATTTGACCAGCGCCCTGATTACGGATTCCTGAAACGCTTGTTTCGTGACTTATTTACACGTGAAGGGTATAAAATGGATTATGTG
TTTGATTGGACTATCTTGAAATATCAGCAGACGCAGAGGTCAAAGTCCCAGCTAGAACTACCTAGTCTGCATCCACTTTCTGTAACGACA
GGTTCTGGAGCATTGCCAAAAGTTTTAAATAAGCAAGGAGGTAATAATGCTACACTTTTAGCTGAAGCTACAAAACAGAAGGTATCAAGT
AATTTTGTACGTGGTGATGGATCAGCAGCTAATCTGAAATCTGATTACCGAACTGGAAAAAATGTAACATTCAATACTTCTGGTCCTTCT
ACGTCGTTGGCTGATGCTTTCAAGAGAAGCTTCCCGAAAAACGAAGATTCAATTGATGTTGGAAATGTAGGTCATGCACACAGTGGAAAA
ACTGGTGCTTCAAGCAGCAAGCTGCATTTCTTAAGCAGGATTTCTTCCAAGTGAACTGGAGGATTTTATGTGGGAGAATTGCAGAAGTGA
AGGTCTACTTTGTGATGTTGAATTCACTTAAACCCTGTGTACCAGTAAGGCATCCATCTCGAGGTGACCATGAAGTATAAAGCAATGAAT
GTTACTAAAAGATGACCTATGAAAACTTGGTCGCCATTTTAAGTTTTCTCCGTCTTGAATTATAGGACAGTGACTAAGCCAGCTACAGTT
CACAATTAAGCTATGTGTAAAGTGTTCTTTTCATTCCTTTTTCTAATAGAGCATAAAAGTGACATTCAAATGTTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118569	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	51
5	129076	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	46

Preceding Unigenes (1)

Unigene	Build
SGN-U218768	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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