Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566372 in the current build, Tomato 200607 #2

Unigene SGN-U322425

Unigene Basic Information

Unigene ID:	SGN-U322425
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	322425
mRNA sequence:	Length: 4115 bp

>SGN-U322425 Tomato 200607 #1 (8 members)
CTTGCCTCTCTCTTCTTCTCTTCTTCTCCATTTGGAGACAGAGAAATAATCAGTTGAACCAGTATTTATCTTACTAAAACTAAGCAGACA
GGATCTGGGTTCCGATTATCTTGGAATCTTGAATCCATTTGAACTGTTAAAAACAAGAAAAAGGATTCAATTTTGAACTGAAAAAGGGAG
AAAGAATTGTTGAATCAGGATGGATATGGAGGATGAATATGAACCCCAATACAATGTTGACGATGATGAAGAGGAGATAACCCAAGAAGA
TGCTTGGGCTGTGATTAGTGCTTACTTTGAGGAGAAGGGTCTTGTTCGTCAACAACTAGATTCGTTTGATGAGTTCATTCAGAATACCAT
GCAAGAAATCGTTGATGAATCTGCTGATATAGAGATCCGTCCTGAGTCCCAGCATAACCCTGGTCACCAATCTGACTTTGCTGAGACTAT
CTACAAAATCAATTTTGGTCAGATTTATTTGAGTAAGCCAATGATGACAGAGTCAGATGGTGAAACTGCTACCTTATTTCCAAAGGCTGC
GAGGTTGAGGAATCTGACATATTCTGCTCCTTTGTACGTTGATGTCACGAAAAGAGTCATTAAGAAAGGGCATGATGGTGAAGAGGTTAC
TGAAACTCAGGACTTCACAAAAGTCTTCATTGGAAAGGTTCCTATAATGCTGCGTTCAAGTTACTGCACATTATATCAAAATTCTGAGAA
AGATCTAACAGAGCTTGGAGAATGTCCATTAGATCAAGGCGGTTATTTCATTATAAATGGAAGTGAAAAGGTCTTAATTGCTCAGGAGAA
GATGAGCACGAACCACGTGTACGTCTTTAAGAAGAGGCAACCTAACAAATATGCCTTCGTTGCGGAAGTCAGGTCAATGGCAGACACTCA
AAATCGCCCACCAAGTACTATGTTCGTGAGGATGCTCTCAAGGACTAGTGCAAAAGGGGGTTCCTCGGGCCAATACATTCGGGCAACACT
TCCGTATATCCGTACAGAGATTCCTATTATTATCGTGTTTCGAGCTCTAGGTTTTGTTGCTGATAAGGATATATTGGAACATATTTGTTA
TGATTTCAATGATACTCAAATGATGGAGTTGTTACGTCCGTCGTTGGAAGAAGCTTTTGTTATTCAAAACCAACAGGTTGCTCTCGACTA
CATCGGAAAAAGAGGGGCTACAGTTGGTGTTACAAGGGAAAAGAGGATTAAGTACGCCAAAGAGATTCTTCAGAAAGAAATGCTTCCTCA
TGTTGGGGTTGGAGAGTATTGTGAAACAAAGAAGGCTTATTATTTTGGGTATATCATCCACCGGCTTCTGTTATGTGCGCTTGGCCGCAG
GGCTGAGGATGATAGGGATCATTACGGAAATAAGAGACTGGATCTTGCCGGTCCTTTGCTTGGTGGGCTGTTTCGGATGCTCTTTAGAAA
GTTGACAAGGGATGTTAGAGGCTATGTGCAAAAGTGTGTTGACAATGGAAAAGATGTAAATCTCCAATTTGCAATCAAAGCTAAGACCAT
TACTAGTGGGCTGAAATACTCTCTTGCTACTGGAAACTGGGGGCAAGCTAATGCAGCTGGTACAAGAGCTGGTGTTTCGCAGGTGCTGAA
TCGTCTGACTTATGCCTCTACTTTGTCTCACTTGCGACGGTTGAATTCCCCTATTGGACGAGAAGGGAAACTGGCCAAACCAAGGCAACT
GCATAATTCACAATGGGGAATGATGTGTCCTGCAGAAACACCAGAGGGTCAAGCATGTGGGCTGGTGAAGAATCTAGCTTTAATGGTTTA
TATAACAGTTGGTTCAGCGGCATATCCAATTTTGGAGTTCTTGGAAGAGTGGGGTACTGAGAACTTTGAGGAAATTTCTCCTGCTGTTAT
TCCACAGGCTACAAAGATCTTTGTCAATGGTACCTGGGTGGGAATTCATCGTGATCCTGACATGTTGGTGAGAACATTGAGACGACTCAG
GAGGCGGGTTGACGTCAATACTGAAGTTGGGGTGGTCCGTGATATCCGTTTGAAAGAACTTCGAATTTATACCGACTATGGCAGGTGCAG
TCGTCCATTGTTTATTGTGGAAAAGCAAAGGCTGATGATCAAGAAGAAGGATATTCAGACACTGCAACAACGGGAATCACCTGACGAGGG
TGGCTGGCACGACCTCGTGGCTAAGGGATACATCGAGTATATTGACACTGAAGAGGAAGAAACAACGATGATTAGCATGACTATAAATGA
TCTTGTGCAAGCGCGCCTTAATCCTGGCGACGCTTATTCTGATACCTATACTCATTGCGAAATTCACCCATCACTAATATTGGGTGTCTG
TGCGTCAATTATTCCGTTTCCTGATCATAATCAGTCTCCCCGTAATACTTATCAGTCAGCTATGGGTAAGCAAGCCATGGGAATTTATGT
CACCAACTACCAATTTCGGATGGACACGTTGGCCTATGTGCTTTATTATCCTCAGAAGCCTCTTGTCACAACACGAGCCATGGAACACTT
GCATTTTAGGCAACTACCTGCGGGGATCAATGCAATTGTCGCCATCTCCTGCTATTCTGGATACAATCAAGAGGATTCTGTCATTATGAA
CCAGTCATCTATTGATCGTGGATTTTTCCGATCTCTATTTTTCCGTTCGTACAGGGATGAGGAGAAAAAGATGGGGACATTGGTCAAGGA
GGATTTTGGACGTCCTGATAGAGCATCTACTATGGGTATGCGCCATGGTTCGTACGATAAGTTGGATGACGATGGTCTTGCCCCTCCAGG
AACTAGAGTTTCTGGTGAGGATGTTATCATTGGGAAGACCACTCCCATTTCTCAGGATGATGCACAAGGGCAAGCCTCTCGCTATACGAG
GAAAGATCACAGTACTAGTCTCCGCCATAGTGAAACTGGAATGGTGGATCAGGTTCTATTAACAACGAATGCTGACGGGCTCAGATTTGT
TAAAGTGAGGGTCAGATCAGTCCGTATTCCTCAAATTGGTGACAAGTTTAGCAGTAGACATGGTCAGAAGGGAACAGTTGGTATGACATA
TACACAAGAAGATATGCCATGGACCGTGGAAGGCATTACTCCTGATATTATTGTAAATCCTCATGCTATTCCTTCTCGAATGACTATTGG
TCAGCTGATTGAATGTATTATGGGGAAGGTTGCCGCACACATGGGAAAAGAAGGTGATGCCACTCCCTTTACGGATGTTACTGTGGATAA
CATCAGTAAAGCTCTGCATAAATGTGGTTACCAGATGCGTGGTTTTGAGACCATGTACAATGGTCATACTGGGCGGCGGCTTAGTGCAAT
GATATTCCTTGGTCCCACATACTACCAGCGGCTGAAGCATATGGTTGATGACAAGATTCATTCTAGAGGCAGAGGCCCTGTGCAAATCCT
CACAAGGCAGCCTGCGGAAGGTCGGTCACGTGATGGTGGTCTTCGTTTTGGAGAGATGGAGCGAGATTGTATGATTGCTCATGGTGCTGC
TCATTTTCTCAAGGAGCGGTTATTTGACCAAAGCGATGCGTACAGAGTTCACGTTTGTGAGCGCTGTGGGCTGATAGCCATTGCCAACCT
CAAGAAGAATTCTTTTGAATGCAGAGGTTGCAAGAACAAAACTGATATCGTCCAGGTTCACATTCCCTATGCATGCAAACTGCTTTTCCA
GGAGCTAATGGCTATGGCTATAGCTCCAAGAATGCTTACAAAGGATGTCAAGCTAGCCAAAGATCAAAAGAAGAAAGGAGCTTGATTAGT
TTATAGTCCCATTCTGGGAAAAAAAGTTGCCTATGTTATAAGATTGAAAGGTCTTGCTTTACCAGCAGTCAGTTTTACATCCACAATATG
AGGATTTACTACTTATTGGTTTTAGAATGGTTGTAGCATCTAAGTGAGAACAACATCCTTATGAACCCTGCAGGTACTGTGTGTTCAAGG
ATGGAGTAATTCTCACATGTAAAATATAAGTAATACTTATATCTGAAGTCTCTTCGAAAAACTCCTGCTTTTCATGTACAAGAGGCTCGT
CGTTAGTCTTGCACCAAATTGAAGAAGTTGAAGCTTTTCAGTTTTGGCAATGAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
rpb2	RNA polymerase II subunit 2

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P125173 (1191 Aa)

MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFG
QIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE
IPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY
CETKKAYYFGYXHPPASVMWLGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGXVQSSIVYC
GKAKADDQEEGYSDTATRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDR
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI
MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA
IAPRMLTKDVKLAKDQKKKGA

SignalP predicts non-secretion with a score of 0.015

IPR007121 RNA polymerase, beta subunit
IPR007641 RNA polymerase Rpb2, domain 7
IPR007644 RNA polymerase beta subunit
IPR007642 RNA polymerase Rpb2, domain 2
IPR007120 RNA polymerase Rpb2, domain 6
IPR007647 RNA polymerase Rpb2, domain 5
IPR001093 IMP dehydrogenase/GMP reductase
IPR007645 RNA polymerase Rpb2, domain 3
IPR007646 RNA polymerase Rpb2, domain 4

Prediction based on longest six frame method

>SGN-P251664 (1193 Aa)

IRMDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIN
FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
LGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR
TEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG
EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGL
KYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF
IVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSI
DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHS
TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA
MAIAPRMLTKDVKLAKDQKKKGA

SignalP predicts non-secretion with a score of 0.013

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101927	RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	28
2	119070	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	21
5	129582	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U226065	Lycopersicon Combined #3
SGN-U239780	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: