Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581676 in the current build, Tomato 200607 #2

Unigene SGN-U323335

Unigene Basic Information

Unigene ID:	SGN-U323335
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	323335
mRNA sequence:	Length: 1901 bp

>SGN-U323335 Tomato 200607 #1 (7 members)
TCCATTCTTTTCTCTGTATATTCTCCGTCAGCTCTCTCCTTTTTCCGGCAATGGAACCTCTAACTCAGGCGAAGAAATCCAACCTCGTAC
TCATCCTAGATTACGGTTCTCAATACACCCATCTCATCACTCGCCGAATTCGAAGTTTATCTGTTTTCTCACTCTGTATCAATGGCACTT
CTTCGTTAGACTCCATAACCGAGCTCAACCCTCGTGTTATTATCCTCTCAGGTGGACCTCACAGTGTCCATGCTGACGGTGCGCCGTGTT
TTCCATCTGGCTTTATTGAGTATGTGGAGTCGCAAGGGATTCATGTGTTGGGGATTTGTTATGGGTTGCAGTTGCTTGTACAGAACCTTG
GTGGAGTTGTGAAGGTTGGGGAGAAGCATGAGTATGGGAGAATGGAAATTGAGGTTCAGAAGAATAATGGGTTGTTTGGGAATAAGCAAA
TTGGGGATAAACAGGTTGTTTGGATGAGCCATGGTGATGAGGCTGTGAATTGCCGGAAGGGGTTGAGGTTGTGGCGAGGAGTAATCAAGG
AGCTGTTGCTGCCATTGAGAATAAGGAAAAAAAGTTTTATGGGGGGCAGCATCATCCTGAGGAGAGGCACCCCCCTGAGGGGGGGGGAAC
AACACCACAACTCCTATTTGATATTTGCGGGATGACACCACGCGTGGAACATGGAAGATGTTCTGGAGGAAGAAATTAAAGTAATTAAAG
CTATGGTAGGACCTGAAGATCATGTGATTTGTGCTTTATCTGGTGGTGTTGATTCCACAGTTGCAGCTACCGTGGTACACAAGGCTATTG
GAGACAGGCTTCACTGTGTTTTTGTTGATAATGGTCTTTTAAGGTACAAGGAGAGAGAAAGAGTGATGGCAACCTTTGAGAGTGACCTTC
ATTTGCCCGTTACCTGCGTTGATGCTACAGAAGAATTTCTCAGCAAACTAAAAGGTGTGACAGAGCCTGAAATGAAAAGGAAAATTATTG
GGAAGGAGTTCATCAACATATTTGATATTTTCGCCCATGATTTAGAGAAAAAAGTGGGAAAGAAACCTGCTTACCTAGTCCAAGGAACAT
TGTATCCTGATGTAATAGAGTCGTGTCCCCCACCTGGAAGTGGAAGAACACATTCACATACGATCAAGAGCCATCATAATGTTGGAGGGC
TCCCAAAGGACATGAAGCTGAAGCTCATCGAGCCACTGAAACTTCTGTTCAAAGATGAGGTTCGTGCAATGGGAAAGATTATGAATATCC
CTGTGGCTTTTCTCAGGCGCCACCCATTTCCTGGTCCGGGACTTGCCGTCCGAATTCCAGGAGATGTCACAGCAGGGAATTCCTTGGATA
TTCTTCGTCAGGTTGATGAGATCTTCATTCAATCAATCAAAGATGCTGGAATCTATGATGAAATTTGGCAAGCTTTTGCTGTCTTCTTAC
CCGTGAAAACTGTTGGAGTACAAGGAGACCAAAGAACACATTCTCATGCTGTTGCACTTAGAGCAGTCACAAGTCAAGATGGAATGACTG
CAGACTGGTACTACTTCGATTTCAAGTTCCTTGACGATGTATCAAGAAAGATTTGCAACAGTGTTCGTGGTGTAAATCGAGTTCTTCTGG
ATATTACATCAAAGCCTCCATCAACAATTGAGTGGGAATGATATGATTATAAAGAATGTTATGTTTAGTGACTAGTGCACGTACTCTTTA
GCTTCTCCCTTTAACTTTCTGCNGGTTGGGAAAGGTGAAAGGGTGCAAAACAGAAGGGGAGAAAAGTTCCATGAAACACAGTATAGGCTC
CNTTTTGTTGTGTGGTAAAATNTGGTTTCTTGTGAACGAATTTGTAAATAGGTGGGTTTATTGATGCAAANATTTTACTGAAAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101766	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	39
2	123150	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase - Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA processing (GO:0008033) GMP synthase N-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: GMP biosynthesis (GO:0006177) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) GMP synthase C-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: purine nucleotide biosynthesis (GO:0006164) - Biological Process: GMP biosynthesis (GO:0006177) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	4
5	133339	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase - Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA processing (GO:0008033) GMP synthase N-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: GMP biosynthesis (GO:0006177) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) GMP synthase C-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: purine nucleotide biosynthesis (GO:0006164) - Biological Process: GMP biosynthesis (GO:0006177) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U225672	Lycopersicon Combined #3
SGN-U228906	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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