Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567160 in the current build, Tomato 200607 #2

Unigene SGN-U325268

Unigene Basic Information

Unigene ID:	SGN-U325268
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	325268
mRNA sequence:	Length: 1374 bp

>SGN-U325268 Tomato 200607 #1 (5 members)
TTTCCACTTAGCACTCTCTCACACATTCCTGCAATTCGCCGAGTTTTACTACTCGCCGTGGTGATTCTAGCGGCGTTCGGTAACGTTCAC
GGCCGGCATAGAGTACACAAATGGGAAACCGTAGAGTACCCTGCCATAAGTTGCAGAGCACACACTGCATCGTTGACGGATTTCGGTGGA
GTCGGCGACGGCAAGACGTTGAATACTGACGCTTTTCGAACGGCGGTTGATCACCTGAGTCAGTTTCAATCGGACGGCGGTTCAATGCTG
TATGTACCTGCCGGAAAATGGCTGACGGGGAGTTTCAATTTGACCAGCCATTTTACTCTGTATCTCGACAAAGACGCCGTTCTTCTCGCC
TCTCAGGATGAAAATGATTATCCTGTGATTGCACCATTGCCATCCTACGGACGAGGAAGGGATACAGAGGGAGGCAGATTCATTAGTCTT
ATTTTTGGATCCAACCTCACTGATGTTGTCATCACAGGTGAAAATGGAACCATTGATGGGCAAGGGCAGCTATGGTGGGACAAATTCCAC
AACGGAGAACTTAAATTTACAAGGCCTTACCTGATAGAAATCATGTACTCTGATAATATTCAGATCTCCAGTCTTACTTTGGTTAATTCT
CCTTCATGGAATGTTCATCCTGTATATTGCAGCAACGTTATCATCCAAGGCATCACTATCCTTGCACCAGTCAGATCTCCAAATACTGAT
GGCATTAATCCTGATTCTTGCATAAATACTAGAATAGAAGACTGTTACATTATCTCCGGAGATGATTGTATTGCTGTTAAGAGTGGTTGG
GACGAGTATGGAGTCGCCTTTGGGATGCCAACAAAGCAGCTAGCTATAAGGCGAATCACCTGCATTTCTCCAACCAGTGCAACAATTGCA
TTAGGCAGTGAGATGTCAGGAGGAATTCAAGATGTAAGAGCAGAGGACATTGTAGCAATCAATACAGAATCAGCGGTTCGAATCAAGACT
GCAGTAGGAAGAGGTGGATACGTGAAAGATATATATGTTAGAGGCGTGACAATGAAAACAATGAAATACGTATTCTGGATGACAGGAGAT
TATGGTTCTCATCCAGACGACAACTATGATCCCAACGCGTTACCTGTGATTGAAAACATCAATTACCGCGATATGGTTGCTGAGAACGTG
ACCATTGCTGCCAAGCTTGCAGGAATTTCTGGTGATCCGTTTACTGGAATCTGCATATCAAATGTCACGATAGAGATGGCGCCTNAAGCA
AAGAAACTTTTCTGGAATTGTACAGATATTTCCGGAATTTCAAGTGGTGTGGTACCTCAGCCTTGGTGATTGTGCCAGATCAGGGGATGG
AGTATGCTTCACCCTGTAATTTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1

mRNA member sequences (5)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101443	Virulence factor pectin lyase fold Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975)	154
2	118567	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Pectolytic enzyme Pectin lyase fold Virulence factor pectin lyase fold	52
5	129061	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Pectolytic enzyme Pectin lyase fold Virulence factor pectin lyase fold	50

Preceding Unigenes (1)

Unigene	Build
SGN-U225131	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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