Sol Genomics Network

Unigene SGN-U577260

Unigene Basic Information

Unigene ID:	SGN-U577260
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1322 bp

>SGN-U577260 Tomato 200607 #2 (59 members)
GGCGATTGGCGGCCAATCGGCCGAAGGGACTTCAAACATAAAAATATTTAAAACTTATAAAAAAACAATACTCAAACAACATGATCAAAA
CATCAAGTTGTATATTTTCTTTCTTTCTTCTAATATGTTTCTTGGTAGTGGTGGCTTTTGGTGGTACTTTCGACCAAGAATTTGATGTTA
CATGGGGTTATGGGAGGGTGAAAATACTCGAAAACGGGCAACTTCTTACTCTTTCCCTCGATAGAAGTTCTGGCTCTGGATTTAAGTCTA
AACAACAATATATGTTTGCAAAGATTGACATGAAGATCAAACTTGTCCCTGGTAATTCTGCTGGCACCGCTACTACATACTATTTATCTT
CGGTGGGGTCAGCTCATGATGAGATTGACTTTGAGTTTCTTGGGAATGTAAGTGGAGAACCATATACTCTTCATACAAATGTGTATGCAC
AAGGCAAGGGAGATAGAGAGCAACAATTTCATCTTTGGTTTGACCCTACTAAGGATTTCCACACCTACTCTATTCTTTGGAATCCTCGAA
ATATCATATTTTTGGTAGATGGGACACCAATAAGACAATACAAGAATCTTGAAGCAACAAATGGAATACCTTACCCAAAGAACCAACCAA
TGTGGTTATACTCAAGTTTATGGAATGCTGAGGAATGGGCAACAAGAGGTGGCCTTGTAAGGACTGATTGGAGTAAAGCCCCTTTTATTG
CTTCTTATAGAAACTTCAATGCCCAAACTTCCAAGAATCCCACAGCCAATTCTTGGTTAACTCAATCATTGGACAATGTTGGGTTAACAA
GGATGAAATGGGTGCAAAAGAACTATATGATATACAATTATTGCACTGATACTAAACGTTTCCCTCAAGGGTTCCCTCATGAATGCACTC
TAAATTAATAAGTTATTGTGTTAAAATATCCTCTATATTTATTTTTTCTTGCTAAATTGGAGTGATACGGTAAGAGTTGTTGTTGTGTGA
ATAAAGATATTATTATAGTTTCCAGTGGTGAAAGTCGAAACAACTTCTCGCAGAAATGGATATGATAAAGATGAGTGTGTATCAAAAGCT
TAATGTATTAAACTGTTATTTTTAAAAAAGTTCGTTCTTTATACTATAAAGAAATGTATATTAGCCCACTTGAGAGTGATATTGTTTGAT
TGTACTTATGAAATAAGTTTGAAATATTGTTTAAGATCTTGACTTGTTCTTGTTATCTCAAAAGTATCTAGGGACACAAGTTATGCTTAT
CTATAATATAAGGGACTCATAATTTAAATTACTATGTTCAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth2	xyloglucan endotransglucosylase-hydrolase 2	xyloglucan endotransglucosylase-hydrolase

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	10
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	6
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	14
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (59)

Alignment image suppressed for unigene with 59 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (13)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U315256	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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