Sol Genomics Network

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Solanum lycopersicum gene Solyc02g014310.2

Gene

Name Solyc02g014310.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc02g014310	Length 4,802

Description

Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait

Location(s)

SL2.50ch02:15735648..15740449

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4802

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc02g014310.2.1	SL2.50ch02:15735648..15740449	2,300	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc02g014310.2 SL2.50ch02:15740449..15735648 (sequence from reverse strand)
TAATTACTAACTTATGATATATTATTGTCGCCGTTGCACAAAAGGGCCTATTTTTACACTATAAAAACAAGCTCAAGAAGATATTTCCATTCATTCTCTTTCGTTAAACCCTAAAGTTTTCCCTTAGGGTTTTATAGCTGTCTACTCCTCCCAGCTGCTTTTTTTCCCCCACAACTTGTAATGGGTAAATCTATCAAGAAGTCCGCCACCAAGGCTGATGCTGCTGTAGTTGCTCCAACCAAATCCATGAAGAAAGGTTTGATCTTTTCCCCCCCTTTTGTTTTTGATGTTTTTCTTGTTATAGGTTCTAAAGTTTCAATTTTTATTAATTTGTCTGATTGGGCTTTTCTTGAAAATTTTGTATGTGGTTTTCCTTTTATTTTTTGTGTTTCTTTTAGCGTCCATGTATGGTGTGTTGAGCAAAATTCATATTTTTTTTCTTAATCATGTGCCCTTTCCCTACCTCTAACGAATTCACGAGCTGATTTTGATGGTTCTTGTTCTTGGTATTGGTTGGTGGTGTGACTAGTTGTCTGTGTCTTAACAGGGAAGAGAGAAGCTGAGGATGAAATTGCCAAGTTGGTGAGTGCAAAGAAGCAGAAGAAAGATGTGGCTGTAGCACAAGCTGTTGAGAAAAAGAAAAGTGATCTCAAAACTCAGAAGAAGAAGAAGCCAGTAAGCAGTTCCTCTGACGATAGCTCCTCTGAGTCGGAGTCTGAGGACGACAAGGTAATACATGCACCTAACTATTTGCATGTTGTCTGTAAGGAATTTTGATTTGTATTGCATTGAATAACTGGATTCATGTGTCTTATTCCTATTTTTTATGCAGCCACTGGTGCCTCCTAAGAAAGTGGCTCCTGCCAAAAAGGGAAAGGTAGCCAGCAGTTCTGATGACTCAGATTCTTCAGATGAGGATGAAGTAAATTACTATCTAACAGCTGCTATGTGCATATTTAATAGTATTTTGTCTTGTTTTGTTACTAATTGCTGGTGGTGTGATGGTCTATAGGCTCCTGCTAAGAAAGTTGTTGTAGCTTCAACTAAGAATGGCGTTGCTGCTAAGAAGAAAGATGAGTCAAGTGATGATTCGGATGATAGCAGCTCTGAGGAAGATGTGCCTGCACCCAAGAAACCTCCTACTAATGGCGCTAAGAAAGACAAGTCAAGTGATGATTCTGATGATAGCAGCTCTGAGGATGATGCTGTTGTTAAGAAGGCACCTGCTGTTGTTAAGAAGGCGCCTGCTGCTGCCTCTAAAAAGCAAGAATCCAGCTCTGATTCCAGTGATGACTCCAGTTCAGATGATGATGATGTAAGGACACCATTCACTTTATGTTTAGTGATGTATGCAAATATGATCCTTTGACAACTTACTTATGAAATTGGTACCATGTTAGATATTTGATTATTGTGGTGCTCACTGATGCTATAACTGATGTTCTTTTTGACAGGAACCTCCCTCTAAGGTAGTTGCTCAACCTAAAAAGGCTCCTCAAGCTGTGAAGAAGACTGGTGACAGCTCTGATGACTCTGATGATTCTGAATCTGATTCTGATTCAGACAAGGTTTGACACTTGATTGTTTTTTGTTGTTTTTGTCCTATTGCTATTTCATTGAATCCATTAACACTTCAGTAATGATCTTATATGTATTTTGAGTATGTTTATATGATATTTTTGCTGGATTTGCATGGTTTTCTGATTATTTTTCCTCTTTAGGGAAAGGCTGCTACTGTAGCTAAAAAGACTGCTGCTGTATCTAAAAAGGTATGCCTGAGTTCCTTCCCTGGCATACTCCACTTCTTTGTCTGAAGTCGTGAACAATATTAGTATATTGTTAGCCAAGGTTATCATATTCGATAAGTTCATCGCTTTTGTAGGTTGCTTCATCTGATGATGACAGTGAGGATGATAGTTCCGAGGAGAGTGATGAAGAGCCTCAAAAGAAAAAGAGCAAGGTCTCTATATGTTTCATTTGTTTAGTTCCAATTTGTATTTCATAGTTCATGCTCTAACACTTGTGTTTAACAGCCCTCGACCACACCAGCCGTCTCAAAAGCTCCAGAAAAGAGTAGCTCTGAGGAATCTTCTGACTCAGACGACTCCTCTGAAGATGAAGAGGATGACAAACCATCCAAAACTCCCAAGAAGGTCATATATTTTCTTATCTTTGGGTTGATCAGCATATTCTTTTTGGCATCATCTGCATCTTTCATAGTAGTGACATCATAGATCTTCCAGTTGGATTAGCTTGCATTGTTTTCCCTTTTTGAATTAATGTTTAGCTGTTCCTACGATATAATTTTGGAGCTTCAATTTATAATTAGTCAAATAAAATCTTGTATGAACTGTGGGAGGATTTTCTTTCTATAGCAGGGTGCTGATGTAGAAATGGTTGATGCTCCTTCTGCTAAAGCTGTAAGTGAAGCTTTATATAATTATGTTCTTAATTGTTAGCTTTATAAAGTTATATTTGCGTGTATTTTAGTTGACACTGTTTTATTTTAAAAATGCAGCAACAAACCCCTATTACTCCTAAAGCCCAAACCCCAGGGGGATCGAAAACATTGTTTGTTGGAAATCTATCCTATTCAGTGGAACAGGCGGATGTGTGAGTTATTATTGAACTTTTCCAGTGTTTTGTCTGTGTGATAATATCTCGGACTTATAAAAGAAGGGTTTTTGCAGGGAGAATTTCTTCAAAGATGCTGGAGAAGTTCAGGAAGTGCGCTTTGCTACACATGAGGATGGTTCATTTAAGGGCTTTGGTCATGTTGAGTTTGTTACTGCTGAAGCTGCGCATAAGGTAGTTTTTTCCATAACCAACTAATCTGATGCATATTTTCCTCTATTCAAAGTAAAGAGACTCTTATTAAATTCCAAGTTTGTCAAAAAAAGAAAATATGGTGACTTTTTAAAGTTCATATATGTATATATGTATGTATGTGTGAGTGTGTGTGTGTAAATGTGTTATCTTATGCATCAGTCTCACTTGACCATGAGCCTATATTGGAAATTCAAAGATTAAAGGGCCCACAATTGTATAGATAAGATAAACACCATCCATTACATACATTGACCTGATTTGCTTTTAAGTCCCCTGTGGATGGAATGCTAAAATAAGGGCTATTCCTCGCAATCTTTCCCTCTTTTCAAAGTGGAGAGACTCTTATTAAATTCCAAGTTTGTCAAAAAAGAAAATATGGTGATTTTTTGAAGTTCATATATGTGTGTATATATATGTGTGTGTGTGTTTTGTATGTGTAAATGTGTTATCTTATGCATCAGTCTCACTTGACCATGAGCCTATATTGGAACTTCAAAGATTAAAGGGCCTACCATAATTGTATAGATAAGATAAACACCATCCATTACATACATTGACCTGATTAGCTTTTAAGTCCCCTGTGGATGGAATGCTAAAATCAATTGTTTGTCAATTTAGGCACTTGAACTTAATGGGCATGATCTTTTGGGCCGTGATGTGAGGTTGGACCTGGCTCGTGAGAGGGGAGAGTATACACCTCGCAGTGGGTATGCAATCTCTGTCCCCTTATTCCTTCCATTTAAGCTGAAAGTGAAGACATCAATTTCAGTATGTTTTTATCTTATGTTATGTAGGAATGAGAACTCATTCCAGAGGCCGGCTAGAAGTGAGGGAACAACAATTTTTGTCAGGGGCTTTGACAAAAATGAGGCTGAAGATCAGGTCCCCTAGTCTTGAACCATTTTAGTTTCTTCCCATTGTCTCTGACACTTCCCTTTGATGTCTTGAGAAGGTCTAAATTTCATATGCTATTTCAGATTAGGAGTTCACTGGAGGAGCACTTTGCATCTTGTGGGAAGATCTTTAAAACAAGAATTCCTACAGACCCAGAAGGCTATATTAAAGGGTATTATTCTCATTTTGACGTGCTTGCTTTCTCAATTTTGATTGTCCAGTTGGCTCTTGACAATTTGTAGGTCGATGGAGGCATTTGTTTTTTTTATTACTGGTGACACTGTTAATTTGGCCTTGTCTTGCAGGATGGCTTATATTGAGTTTGCAAATGGAGATGCTGATGCTCTAAACAAAGCTCTGGAGCTTGATGGATCAGAAGTTGGAGGGTTTAGCTTGAATGTGCAAGAAGCAAAACCAAGGGGTGACAGTGCAGGTGGAGGAGGCAGAGGTTTTGGTGGTAGAAGTGGTGGTAGGGGTGGAGGTAGAGATAGTGGTGGTAGATTTGGTGGTCGTGGTGGTGGAGGCCGCTTTGGAGGTGGAGGCCGCTTTGGTGGCGGTGGACGCGGTGGAGGTGGTGGACGTTTTGGCGGTGGAGGCAGAGGACGAGGAAATGCCAACAAGCCAAGCTTCACTCCATCTGGTAATGTCCATTGTATCTGAAACTTTTACTATTTACTTGGGGAAAAAAATGAGACCTTGTCTGTCGCAAAGATGAACAAATGCTACTACACTGGATCTCAGAATAGTGGTGCAGAACTCTCTTTAATCATTTATAATTTCATTATTTTCTTGTCTAATCCAATTTAATGTTGTTGTAATTTTGCAGGTAAGAAGACTACCTTTAGTGACGAGTAACTTGGTCGCTATTGGCCAACTTATCTAAATCTCGTGGACGTTTTATCTTATTTTAAAAATATTATAAATTTTGTTAGCAAGAACTTTAGTAGTTAGTAGACAAATGGGATAATTTTGTTTCTTTTGAGTTCATGTACCATTCTTTGTGGGTGGAAAATGAGAGTTTGTTCAATGTTGATATCCAGTGTTTGTGGTATCTATCTCTTATATAATTGCTTCATATG

Download sequence region

Download sequence (4.7Kb)

Get flanking sequences on SL2.50ch02

mRNA Solyc02g014310.2.1

Ontology terms

terms associated with this mRNA

GO:0003676 – nucleic acid binding
GO:0000166 – nucleotide binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc02g014310.2.1 Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
TAATTACTAACTTATGATATATTATTGTCGCCGTTGCACAAAAGGGCCTATTTTTACACTATAAAAACAAGCTCAAGAAGATATTTCCATTCATTCTCTTTCGTTAAACCCTAAAGTTTTCCCTTAGGGTTTTATAGCTGTCTACTCCTCCCAGCTGCTTTTTTTCCCCCACAACTTGTAATGGGTAAATCTATCAAGAAGTCCGCCACCAAGGCTGATGCTGCTGTAGTTGCTCCAACCAAATCCATGAAGAAAGGGAAGAGAGAAGCTGAGGATGAAATTGCCAAGTTGGTGAGTGCAAAGAAGCAGAAGAAAGATGTGGCTGTAGCACAAGCTGTTGAGAAAAAGAAAAGTGATCTCAAAACTCAGAAGAAGAAGAAGCCAGTAAGCAGTTCCTCTGACGATAGCTCCTCTGAGTCGGAGTCTGAGGACGACAAGCCACTGGTGCCTCCTAAGAAAGTGGCTCCTGCCAAAAAGGGAAAGGTAGCCAGCAGTTCTGATGACTCAGATTCTTCAGATGAGGATGAAGCTCCTGCTAAGAAAGTTGTTGTAGCTTCAACTAAGAATGGCGTTGCTGCTAAGAAGAAAGATGAGTCAAGTGATGATTCGGATGATAGCAGCTCTGAGGAAGATGTGCCTGCACCCAAGAAACCTCCTACTAATGGCGCTAAGAAAGACAAGTCAAGTGATGATTCTGATGATAGCAGCTCTGAGGATGATGCTGTTGTTAAGAAGGCACCTGCTGTTGTTAAGAAGGCGCCTGCTGCTGCCTCTAAAAAGCAAGAATCCAGCTCTGATTCCAGTGATGACTCCAGTTCAGATGATGATGATGAACCTCCCTCTAAGGTAGTTGCTCAACCTAAAAAGGCTCCTCAAGCTGTGAAGAAGACTGGTGACAGCTCTGATGACTCTGATGATTCTGAATCTGATTCTGATTCAGACAAGGGAAAGGCTGCTACTGTAGCTAAAAAGACTGCTGCTGTATCTAAAAAGGTTGCTTCATCTGATGATGACAGTGAGGATGATAGTTCCGAGGAGAGTGATGAAGAGCCTCAAAAGAAAAAGAGCAAGCCCTCGACCACACCAGCCGTCTCAAAAGCTCCAGAAAAGAGTAGCTCTGAGGAATCTTCTGACTCAGACGACTCCTCTGAAGATGAAGAGGATGACAAACCATCCAAAACTCCCAAGAAGGGTGCTGATGTAGAAATGGTTGATGCTCCTTCTGCTAAAGCTCAACAAACCCCTATTACTCCTAAAGCCCAAACCCCAGGGGGATCGAAAACATTGTTTGTTGGAAATCTATCCTATTCAGTGGAACAGGCGGATGTGGAGAATTTCTTCAAAGATGCTGGAGAAGTTCAGGAAGTGCGCTTTGCTACACATGAGGATGGTTCATTTAAGGGCTTTGGTCATGTTGAGTTTGTTACTGCTGAAGCTGCGCATAAGGCACTTGAACTTAATGGGCATGATCTTTTGGGCCGTGATGTGAGGTTGGACCTGGCTCGTGAGAGGGGAGAGTATACACCTCGCAGTGGGAATGAGAACTCATTCCAGAGGCCGGCTAGAAGTGAGGGAACAACAATTTTTGTCAGGGGCTTTGACAAAAATGAGGCTGAAGATCAGATTAGGAGTTCACTGGAGGAGCACTTTGCATCTTGTGGGAAGATCTTTAAAACAAGAATTCCTACAGACCCAGAAGGCTATATTAAAGGGATGGCTTATATTGAGTTTGCAAATGGAGATGCTGATGCTCTAAACAAAGCTCTGGAGCTTGATGGATCAGAAGTTGGAGGGTTTAGCTTGAATGTGCAAGAAGCAAAACCAAGGGGTGACAGTGCAGGTGGAGGAGGCAGAGGTTTTGGTGGTAGAAGTGGTGGTAGGGGTGGAGGTAGAGATAGTGGTGGTAGATTTGGTGGTCGTGGTGGTGGAGGCCGCTTTGGAGGTGGAGGCCGCTTTGGTGGCGGTGGACGCGGTGGAGGTGGTGGACGTTTTGGCGGTGGAGGCAGAGGACGAGGAAATGCCAACAAGCCAAGCTTCACTCCATCTGGTAAGAAGACTACCTTTAGTGACGAGTAACTTGGTCGCTATTGGCCAACTTATCTAAATCTCGTGGACGTTTTATCTTATTTTAAAAATATTATAAATTTTGTTAGCAAGAACTTTAGTAGTTAGTAGACAAATGGGATAATTTTGTTTCTTTTGAGTTCATGTACCATTCTTTGTGGGTGGAAAATGAGAGTTTGTTCAATGTTGATATCCAGTGTTTGTGGTATCTATCTCTTATATAATTGCTTCATATG

Download sequence (2.3Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc02g014310.2.1	SL2.50ch02:15735871..15740269	632	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc02g014310.2	SL2.50ch02:15735648..15740449	4,802	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc02g014310.2.1.1	SL2.50ch02:15740194..15740449	256	-	2
exon	exon:Solyc02g014310.2.1.10	SL2.50ch02:15737837..15737931	95	-	1
exon	exon:Solyc02g014310.2.1.11	SL2.50ch02:15737642..15737759	118	-	n/a
exon	exon:Solyc02g014310.2.1.12	SL2.50ch02:15736914..15737002	89	-	1
exon	exon:Solyc02g014310.2.1.13	SL2.50ch02:15736739..15736826	88	-	n/a
exon	exon:Solyc02g014310.2.1.14	SL2.50ch02:15736555..15736643	89	-	1
exon	exon:Solyc02g014310.2.1.15	SL2.50ch02:15736087..15736421	335	-	2
exon	exon:Solyc02g014310.2.1.16	SL2.50ch02:15735648..15735900	253	-	n/a
exon	exon:Solyc02g014310.2.1.2	SL2.50ch02:15739721..15739902	182	-	n/a
exon	exon:Solyc02g014310.2.1.3	SL2.50ch02:15739528..15739617	90	-	n/a
exon	exon:Solyc02g014310.2.1.4	SL2.50ch02:15739135..15739437	303	-	n/a
exon	exon:Solyc02g014310.2.1.5	SL2.50ch02:15738882..15738995	114	-	n/a
exon	exon:Solyc02g014310.2.1.6	SL2.50ch02:15738681..15738728	48	-	n/a
exon	exon:Solyc02g014310.2.1.7	SL2.50ch02:15738490..15738567	78	-	n/a
exon	exon:Solyc02g014310.2.1.8	SL2.50ch02:15738297..15738416	120	-	n/a
exon	exon:Solyc02g014310.2.1.9	SL2.50ch02:15738030..15738071	42	-	n/a
intron	intron:Solyc02g014310.2.1.10	SL2.50ch02:15737932..15738029	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.11	SL2.50ch02:15737760..15737836	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.12	SL2.50ch02:15737003..15737641	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.13	SL2.50ch02:15736827..15736913	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.14	SL2.50ch02:15736644..15736738	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.15	SL2.50ch02:15736422..15736554	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.16	SL2.50ch02:15735901..15736086	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.2	SL2.50ch02:15739903..15740193	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.3	SL2.50ch02:15739618..15739720	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.4	SL2.50ch02:15739438..15739527	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.5	SL2.50ch02:15738996..15739134	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.6	SL2.50ch02:15738729..15738881	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.7	SL2.50ch02:15738568..15738680	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.8	SL2.50ch02:15738417..15738489	n/a	-	n/a
intron	intron:Solyc02g014310.2.1.9	SL2.50ch02:15738072..15738296	n/a	-	n/a

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Related views

Genetic loci

Tomato locus ua-3 (glycine rich protein X55695)

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17713242%2Fdetails feature 17713242

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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