Solanum lycopersicum mRNA Solyc02g014310.2.1
 mRNA details
|
| Name | Type |
Length
2,300
|
Organism |
|
Description
Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
|
|
Location(s)
SL2.50ch02:15735648..15740449
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| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0003676
- GO:0000166
- Length
- 4802
- Nb exon
- 16
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc02g014310.2.1 Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
TAATTACTAACTTATGATATATTATTGTCGCCGTTGCACAAAAGGGCCTATTTTTACACTATAAAAACAAGCTCAAGAAGATATTTCCATTCATTCTCTTTCGTTAAACCCTAAAGTTTTCCCTTAGGGTTTTATAGCTGTCTACTCCTCCCAGCTGCTTTTTTTCCCCCACAACTTGTAATGGGTAAATCTATCAAGAAGTCCGCCACCAAGGCTGATGCTGCTGTAGTTGCTCCAACCAAATCCATGAAGAAAGGGAAGAGAGAAGCTGAGGATGAAATTGCCAAGTTGGTGAGTGCAAAGAAGCAGAAGAAAGATGTGGCTGTAGCACAAGCTGTTGAGAAAAAGAAAAGTGATCTCAAAACTCAGAAGAAGAAGAAGCCAGTAAGCAGTTCCTCTGACGATAGCTCCTCTGAGTCGGAGTCTGAGGACGACAAGCCACTGGTGCCTCCTAAGAAAGTGGCTCCTGCCAAAAAGGGAAAGGTAGCCAGCAGTTCTGATGACTCAGATTCTTCAGATGAGGATGAAGCTCCTGCTAAGAAAGTTGTTGTAGCTTCAACTAAGAATGGCGTTGCTGCTAAGAAGAAAGATGAGTCAAGTGATGATTCGGATGATAGCAGCTCTGAGGAAGATGTGCCTGCACCCAAGAAACCTCCTACTAATGGCGCTAAGAAAGACAAGTCAAGTGATGATTCTGATGATAGCAGCTCTGAGGATGATGCTGTTGTTAAGAAGGCACCTGCTGTTGTTAAGAAGGCGCCTGCTGCTGCCTCTAAAAAGCAAGAATCCAGCTCTGATTCCAGTGATGACTCCAGTTCAGATGATGATGATGAACCTCCCTCTAAGGTAGTTGCTCAACCTAAAAAGGCTCCTCAAGCTGTGAAGAAGACTGGTGACAGCTCTGATGACTCTGATGATTCTGAATCTGATTCTGATTCAGACAAGGGAAAGGCTGCTACTGTAGCTAAAAAGACTGCTGCTGTATCTAAAAAGGTTGCTTCATCTGATGATGACAGTGAGGATGATAGTTCCGAGGAGAGTGATGAAGAGCCTCAAAAGAAAAAGAGCAAGCCCTCGACCACACCAGCCGTCTCAAAAGCTCCAGAAAAGAGTAGCTCTGAGGAATCTTCTGACTCAGACGACTCCTCTGAAGATGAAGAGGATGACAAACCATCCAAAACTCCCAAGAAGGGTGCTGATGTAGAAATGGTTGATGCTCCTTCTGCTAAAGCTCAACAAACCCCTATTACTCCTAAAGCCCAAACCCCAGGGGGATCGAAAACATTGTTTGTTGGAAATCTATCCTATTCAGTGGAACAGGCGGATGTGGAGAATTTCTTCAAAGATGCTGGAGAAGTTCAGGAAGTGCGCTTTGCTACACATGAGGATGGTTCATTTAAGGGCTTTGGTCATGTTGAGTTTGTTACTGCTGAAGCTGCGCATAAGGCACTTGAACTTAATGGGCATGATCTTTTGGGCCGTGATGTGAGGTTGGACCTGGCTCGTGAGAGGGGAGAGTATACACCTCGCAGTGGGAATGAGAACTCATTCCAGAGGCCGGCTAGAAGTGAGGGAACAACAATTTTTGTCAGGGGCTTTGACAAAAATGAGGCTGAAGATCAGATTAGGAGTTCACTGGAGGAGCACTTTGCATCTTGTGGGAAGATCTTTAAAACAAGAATTCCTACAGACCCAGAAGGCTATATTAAAGGGATGGCTTATATTGAGTTTGCAAATGGAGATGCTGATGCTCTAAACAAAGCTCTGGAGCTTGATGGATCAGAAGTTGGAGGGTTTAGCTTGAATGTGCAAGAAGCAAAACCAAGGGGTGACAGTGCAGGTGGAGGAGGCAGAGGTTTTGGTGGTAGAAGTGGTGGTAGGGGTGGAGGTAGAGATAGTGGTGGTAGATTTGGTGGTCGTGGTGGTGGAGGCCGCTTTGGAGGTGGAGGCCGCTTTGGTGGCGGTGGACGCGGTGGAGGTGGTGGACGTTTTGGCGGTGGAGGCAGAGGACGAGGAAATGCCAACAAGCCAAGCTTCACTCCATCTGGTAAGAAGACTACCTTTAGTGACGAGTAACTTGGTCGCTATTGGCCAACTTATCTAAATCTCGTGGACGTTTTATCTTATTTTAAAAATATTATAAATTTTGTTAGCAAGAACTTTAGTAGTTAGTAGACAAATGGGATAATTTTGTTTCTTTTGAGTTCATGTACCATTCTTTGTGGGTGGAAAATGAGAGTTTGTTCAATGTTGATATCCAGTGTTTGTGGTATCTATCTCTTATATAATTGCTTCATATG
TAATTACTAACTTATGATATATTATTGTCGCCGTTGCACAAAAGGGCCTATTTTTACACTATAAAAACAAGCTCAAGAAGATATTTCCATTCATTCTCTTTCGTTAAACCCTAAAGTTTTCCCTTAGGGTTTTATAGCTGTCTACTCCTCCCAGCTGCTTTTTTTCCCCCACAACTTGTAATGGGTAAATCTATCAAGAAGTCCGCCACCAAGGCTGATGCTGCTGTAGTTGCTCCAACCAAATCCATGAAGAAAGGGAAGAGAGAAGCTGAGGATGAAATTGCCAAGTTGGTGAGTGCAAAGAAGCAGAAGAAAGATGTGGCTGTAGCACAAGCTGTTGAGAAAAAGAAAAGTGATCTCAAAACTCAGAAGAAGAAGAAGCCAGTAAGCAGTTCCTCTGACGATAGCTCCTCTGAGTCGGAGTCTGAGGACGACAAGCCACTGGTGCCTCCTAAGAAAGTGGCTCCTGCCAAAAAGGGAAAGGTAGCCAGCAGTTCTGATGACTCAGATTCTTCAGATGAGGATGAAGCTCCTGCTAAGAAAGTTGTTGTAGCTTCAACTAAGAATGGCGTTGCTGCTAAGAAGAAAGATGAGTCAAGTGATGATTCGGATGATAGCAGCTCTGAGGAAGATGTGCCTGCACCCAAGAAACCTCCTACTAATGGCGCTAAGAAAGACAAGTCAAGTGATGATTCTGATGATAGCAGCTCTGAGGATGATGCTGTTGTTAAGAAGGCACCTGCTGTTGTTAAGAAGGCGCCTGCTGCTGCCTCTAAAAAGCAAGAATCCAGCTCTGATTCCAGTGATGACTCCAGTTCAGATGATGATGATGAACCTCCCTCTAAGGTAGTTGCTCAACCTAAAAAGGCTCCTCAAGCTGTGAAGAAGACTGGTGACAGCTCTGATGACTCTGATGATTCTGAATCTGATTCTGATTCAGACAAGGGAAAGGCTGCTACTGTAGCTAAAAAGACTGCTGCTGTATCTAAAAAGGTTGCTTCATCTGATGATGACAGTGAGGATGATAGTTCCGAGGAGAGTGATGAAGAGCCTCAAAAGAAAAAGAGCAAGCCCTCGACCACACCAGCCGTCTCAAAAGCTCCAGAAAAGAGTAGCTCTGAGGAATCTTCTGACTCAGACGACTCCTCTGAAGATGAAGAGGATGACAAACCATCCAAAACTCCCAAGAAGGGTGCTGATGTAGAAATGGTTGATGCTCCTTCTGCTAAAGCTCAACAAACCCCTATTACTCCTAAAGCCCAAACCCCAGGGGGATCGAAAACATTGTTTGTTGGAAATCTATCCTATTCAGTGGAACAGGCGGATGTGGAGAATTTCTTCAAAGATGCTGGAGAAGTTCAGGAAGTGCGCTTTGCTACACATGAGGATGGTTCATTTAAGGGCTTTGGTCATGTTGAGTTTGTTACTGCTGAAGCTGCGCATAAGGCACTTGAACTTAATGGGCATGATCTTTTGGGCCGTGATGTGAGGTTGGACCTGGCTCGTGAGAGGGGAGAGTATACACCTCGCAGTGGGAATGAGAACTCATTCCAGAGGCCGGCTAGAAGTGAGGGAACAACAATTTTTGTCAGGGGCTTTGACAAAAATGAGGCTGAAGATCAGATTAGGAGTTCACTGGAGGAGCACTTTGCATCTTGTGGGAAGATCTTTAAAACAAGAATTCCTACAGACCCAGAAGGCTATATTAAAGGGATGGCTTATATTGAGTTTGCAAATGGAGATGCTGATGCTCTAAACAAAGCTCTGGAGCTTGATGGATCAGAAGTTGGAGGGTTTAGCTTGAATGTGCAAGAAGCAAAACCAAGGGGTGACAGTGCAGGTGGAGGAGGCAGAGGTTTTGGTGGTAGAAGTGGTGGTAGGGGTGGAGGTAGAGATAGTGGTGGTAGATTTGGTGGTCGTGGTGGTGGAGGCCGCTTTGGAGGTGGAGGCCGCTTTGGTGGCGGTGGACGCGGTGGAGGTGGTGGACGTTTTGGCGGTGGAGGCAGAGGACGAGGAAATGCCAACAAGCCAAGCTTCACTCCATCTGGTAAGAAGACTACCTTTAGTGACGAGTAACTTGGTCGCTATTGGCCAACTTATCTAAATCTCGTGGACGTTTTATCTTATTTTAAAAATATTATAAATTTTGTTAGCAAGAACTTTAGTAGTTAGTAGACAAATGGGATAATTTTGTTTCTTTTGAGTTCATGTACCATTCTTTGTGGGTGGAAAATGAGAGTTTGTTCAATGTTGATATCCAGTGTTTGTGGTATCTATCTCTTATATAATTGCTTCATATG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc02g014310.2.1 | SL2.50ch02:15735871..15740269 | 632 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc02g014310.2 | SL2.50ch02:15735648..15740449 | 4,802 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc02g014310.2.1.1 | SL2.50ch02:15740194..15740449 | 256 | - | 2 |
| exon | exon:Solyc02g014310.2.1.10 | SL2.50ch02:15737837..15737931 | 95 | - | 1 |
| exon | exon:Solyc02g014310.2.1.11 | SL2.50ch02:15737642..15737759 | 118 | - | n/a |
| exon | exon:Solyc02g014310.2.1.12 | SL2.50ch02:15736914..15737002 | 89 | - | 1 |
| exon | exon:Solyc02g014310.2.1.13 | SL2.50ch02:15736739..15736826 | 88 | - | n/a |
| exon | exon:Solyc02g014310.2.1.14 | SL2.50ch02:15736555..15736643 | 89 | - | 1 |
| exon | exon:Solyc02g014310.2.1.15 | SL2.50ch02:15736087..15736421 | 335 | - | 2 |
| exon | exon:Solyc02g014310.2.1.16 | SL2.50ch02:15735648..15735900 | 253 | - | n/a |
| exon | exon:Solyc02g014310.2.1.2 | SL2.50ch02:15739721..15739902 | 182 | - | n/a |
| exon | exon:Solyc02g014310.2.1.3 | SL2.50ch02:15739528..15739617 | 90 | - | n/a |
| exon | exon:Solyc02g014310.2.1.4 | SL2.50ch02:15739135..15739437 | 303 | - | n/a |
| exon | exon:Solyc02g014310.2.1.5 | SL2.50ch02:15738882..15738995 | 114 | - | n/a |
| exon | exon:Solyc02g014310.2.1.6 | SL2.50ch02:15738681..15738728 | 48 | - | n/a |
| exon | exon:Solyc02g014310.2.1.7 | SL2.50ch02:15738490..15738567 | 78 | - | n/a |
| exon | exon:Solyc02g014310.2.1.8 | SL2.50ch02:15738297..15738416 | 120 | - | n/a |
| exon | exon:Solyc02g014310.2.1.9 | SL2.50ch02:15738030..15738071 | 42 | - | n/a |
| intron | intron:Solyc02g014310.2.1.10 | SL2.50ch02:15737932..15738029 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.11 | SL2.50ch02:15737760..15737836 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.12 | SL2.50ch02:15737003..15737641 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.13 | SL2.50ch02:15736827..15736913 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.14 | SL2.50ch02:15736644..15736738 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.15 | SL2.50ch02:15736422..15736554 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.16 | SL2.50ch02:15735901..15736086 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.2 | SL2.50ch02:15739903..15740193 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.3 | SL2.50ch02:15739618..15739720 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.4 | SL2.50ch02:15739438..15739527 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.5 | SL2.50ch02:15738996..15739134 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.6 | SL2.50ch02:15738729..15738881 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.7 | SL2.50ch02:15738568..15738680 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.8 | SL2.50ch02:15738417..15738489 | n/a | - | n/a |
| intron | intron:Solyc02g014310.2.1.9 | SL2.50ch02:15738072..15738296 | n/a | - | n/a |
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