Solanum lycopersicum mRNA Solyc03g019790.2.1
 mRNA details
|
| Name | Type |
Length
1,612
|
Organism |
|
Description
Alpha-galactosidase (AHRD V1 **** Q9SP05_SOLLC); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel
|
|
Location(s)
SL2.50ch03:61371475..61377262
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0008152
- GO:0005975
- Length
- 5788
- Nb exon
- 15
- Sifter term
- GO:0004557
- GO:0008456
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g019790.2.1 Alpha-galactosidase (AHRD V1 **** Q9SP05_SOLLC); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel
CATAGCATTAATATAAACAATATAAATAGGTAGGTTGTCATTCACATATTAAAACCCCAAAGTTTTTTGCTTCCCCTTTCACTTAAAAGGGGCTCTCTTGAACATTTAAATATTGTTCGTAGCCAAAGCTCTAAAGCCTATCGGAAAAACGATGTCATCAACTTCACCACTTCTGTTGTGGTGCTGCTTGTGTTTGTCTCTGGCTACGGTATATGCTCGTCTGCAGCCACGAAATCTCATCGTTAATTCAAATTTAAGTGTAAATGAATTCAACCGGAGAAACCTCTTGGGCAATGGCCTTGGCCAAACTCCGCAAATGGGATGGAGCAGCTGGAATCATTTTGGTTGCAATATAGATGAGAACATAATAAAGGGGACAGCTGATGCAATGGTACATACTGGACTTGCTTCTCTTGGATATGAGTACATCAATATAGATGACTGTTGGGCCGAAGCCAATAGAGACTCGCAGGGAAATATGGTTGCTAAAGGTTCAACTTTTCCTTCTGGGATTAAAGCACTGGCAGATTATGTTCACGGCAAAGGATTAAAACTTGGAGTTTATTCTGATGCTGGGACTCAGACGTGTAGTAAACAAATGCCAGGTTCATTAGGACACGAAGAACAAGACGCAAAAACTTTTGCTTCCTGGGGTGTTGATTACTTGAAGTATGATAATTGTAACAATGAAGATCGAAGTCCAAGAGAAAGGTATCCCATAATGAGCAATGCTTTACAAAACTCTGGAAGGGCTATATTTTATTCCATGTGTGAATGGGGAGATGATAATCCTGCCACGTGGGCTTCCTCTGTTGGAAATAGTTGGAGAACTACTGGAGATATTACTGATGATTGGAACAGTATGACTTCTCGGGCTGATTTGAATGATCAGTGGGCATCTTATGCTGGTCCAGGTGGCTGGAATGATCCAGATATGTTAGAAGTTGGAAATGGAGGAATGAGTTTTGGAGAATATCGTTCTCATTTCAGTATTTGGGCATTAGTAAAGGCACCTTTAATTATAGGTTGTGATTTAAGATCAATGGATAATACTGCCCATGACATTCTAAGTAATCCAGAGGTCATTGCAGTTAATCAAGATAAACTTGGAGTTCAAGGTAAAAAAGTTAAGCAATATGGAGATTTGGAGGTTTGGGCAGGGCCTTTAAGTGGGAAAAGAGTAGCAGTTGTGCTATGGAACAGAGGATCATATAAGGCTGATATAACTGCTTATTGGTCTGATATTGGCCTTGATTATTCCACTCTTGTTGATGCAAGAGACTTGTGGGCTCATTCAACAAAAGGATCAGTTAAAGGACAACTATCAGCAAGTGTTGAATCACATGATTGCAGCATGTATGTTCTTACTCCAAAAAAATAAGTTCAACCACATCAAATTAAATGTTAAAATTTATGTGGAAAAATACCACAATGCTGGAGGAGTACTAATACATAATCTAGTTAAGAGTAAGAACAATAAATTAAAAGGATTTTGTTATTATATCTATGTTATATAGTTAAGAGACGTTTCTTTGTATCGTATTAAACTTAAATAGTGAATTTTGTGTGGGGAGAATTTGATATGAGATATATATCATTATGTTTTAAGTAC
CATAGCATTAATATAAACAATATAAATAGGTAGGTTGTCATTCACATATTAAAACCCCAAAGTTTTTTGCTTCCCCTTTCACTTAAAAGGGGCTCTCTTGAACATTTAAATATTGTTCGTAGCCAAAGCTCTAAAGCCTATCGGAAAAACGATGTCATCAACTTCACCACTTCTGTTGTGGTGCTGCTTGTGTTTGTCTCTGGCTACGGTATATGCTCGTCTGCAGCCACGAAATCTCATCGTTAATTCAAATTTAAGTGTAAATGAATTCAACCGGAGAAACCTCTTGGGCAATGGCCTTGGCCAAACTCCGCAAATGGGATGGAGCAGCTGGAATCATTTTGGTTGCAATATAGATGAGAACATAATAAAGGGGACAGCTGATGCAATGGTACATACTGGACTTGCTTCTCTTGGATATGAGTACATCAATATAGATGACTGTTGGGCCGAAGCCAATAGAGACTCGCAGGGAAATATGGTTGCTAAAGGTTCAACTTTTCCTTCTGGGATTAAAGCACTGGCAGATTATGTTCACGGCAAAGGATTAAAACTTGGAGTTTATTCTGATGCTGGGACTCAGACGTGTAGTAAACAAATGCCAGGTTCATTAGGACACGAAGAACAAGACGCAAAAACTTTTGCTTCCTGGGGTGTTGATTACTTGAAGTATGATAATTGTAACAATGAAGATCGAAGTCCAAGAGAAAGGTATCCCATAATGAGCAATGCTTTACAAAACTCTGGAAGGGCTATATTTTATTCCATGTGTGAATGGGGAGATGATAATCCTGCCACGTGGGCTTCCTCTGTTGGAAATAGTTGGAGAACTACTGGAGATATTACTGATGATTGGAACAGTATGACTTCTCGGGCTGATTTGAATGATCAGTGGGCATCTTATGCTGGTCCAGGTGGCTGGAATGATCCAGATATGTTAGAAGTTGGAAATGGAGGAATGAGTTTTGGAGAATATCGTTCTCATTTCAGTATTTGGGCATTAGTAAAGGCACCTTTAATTATAGGTTGTGATTTAAGATCAATGGATAATACTGCCCATGACATTCTAAGTAATCCAGAGGTCATTGCAGTTAATCAAGATAAACTTGGAGTTCAAGGTAAAAAAGTTAAGCAATATGGAGATTTGGAGGTTTGGGCAGGGCCTTTAAGTGGGAAAAGAGTAGCAGTTGTGCTATGGAACAGAGGATCATATAAGGCTGATATAACTGCTTATTGGTCTGATATTGGCCTTGATTATTCCACTCTTGTTGATGCAAGAGACTTGTGGGCTCATTCAACAAAAGGATCAGTTAAAGGACAACTATCAGCAAGTGTTGAATCACATGATTGCAGCATGTATGTTCTTACTCCAAAAAAATAAGTTCAACCACATCAAATTAAATGTTAAAATTTATGTGGAAAAATACCACAATGCTGGAGGAGTACTAATACATAATCTAGTTAAGAGTAAGAACAATAAATTAAAAGGATTTTGTTATTATATCTATGTTATATAGTTAAGAGACGTTTCTTTGTATCGTATTAAACTTAAATAGTGAATTTTGTGTGGGGAGAATTTGATATGAGATATATATCATTATGTTTTAAGTAC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g019790.2.1 | SL2.50ch03:61371625..61377031 | 410 | + | n/a |
Add items to a list:
| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g019790.2 | SL2.50ch03:61371475..61377262 | 5,788 | + | n/a |
Add items to a list:
| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g019790.2.1.1 | SL2.50ch03:61371475..61371795 | 321 | + | 1 |
| exon | exon:Solyc03g019790.2.1.10 | SL2.50ch03:61374892..61374956 | 65 | + | 2 |
| exon | exon:Solyc03g019790.2.1.11 | SL2.50ch03:61375090..61375172 | 83 | + | n/a |
| exon | exon:Solyc03g019790.2.1.12 | SL2.50ch03:61375272..61375362 | 91 | + | 2 |
| exon | exon:Solyc03g019790.2.1.13 | SL2.50ch03:61375905..61375954 | 50 | + | n/a |
| exon | exon:Solyc03g019790.2.1.14 | SL2.50ch03:61376044..61376184 | 141 | + | n/a |
| exon | exon:Solyc03g019790.2.1.15 | SL2.50ch03:61376942..61377262 | 321 | + | n/a |
| exon | exon:Solyc03g019790.2.1.2 | SL2.50ch03:61373079..61373137 | 59 | + | 2 |
| exon | exon:Solyc03g019790.2.1.3 | SL2.50ch03:61373283..61373339 | 57 | + | 2 |
| exon | exon:Solyc03g019790.2.1.4 | SL2.50ch03:61373547..61373581 | 35 | + | n/a |
| exon | exon:Solyc03g019790.2.1.5 | SL2.50ch03:61373698..61373801 | 104 | + | 1 |
| exon | exon:Solyc03g019790.2.1.6 | SL2.50ch03:61373892..61373967 | 76 | + | n/a |
| exon | exon:Solyc03g019790.2.1.7 | SL2.50ch03:61374121..61374179 | 59 | + | 1 |
| exon | exon:Solyc03g019790.2.1.8 | SL2.50ch03:61374409..61374474 | 66 | + | 1 |
| exon | exon:Solyc03g019790.2.1.9 | SL2.50ch03:61374639..61374722 | 84 | + | 1 |
| intron | intron:Solyc03g019790.2.1.10 | SL2.50ch03:61374723..61374891 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.11 | SL2.50ch03:61374957..61375089 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.12 | SL2.50ch03:61375173..61375271 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.13 | SL2.50ch03:61375363..61375904 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.14 | SL2.50ch03:61375955..61376043 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.15 | SL2.50ch03:61376185..61376941 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.2 | SL2.50ch03:61371796..61373078 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.3 | SL2.50ch03:61373138..61373282 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.4 | SL2.50ch03:61373340..61373546 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.5 | SL2.50ch03:61373582..61373697 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.6 | SL2.50ch03:61373802..61373891 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.7 | SL2.50ch03:61373968..61374120 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.8 | SL2.50ch03:61374180..61374408 | n/a | + | n/a |
| intron | intron:Solyc03g019790.2.1.9 | SL2.50ch03:61374475..61374638 | n/a | + | n/a |
Add items to a list:
| Related views |
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
