Solanum lycopersicum mRNA Solyc03g115390.2.1
 mRNA details
|
| Name | Type |
Length
2,910
|
Organism |
| Description |
|
Location(s)
SL2.50ch03:65108844..65124227
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0004386
- GO:0008026
- GO:0005524
- GO:0005975
- Length
- 15384
- Nb exon
- 24
- Sifter term
- GO:0004004
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g115390.2.1 ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605
GCTGATGATGAAGATGACAATATTGTCGGTGTGGAAAGTAGTTCCGTTCCTTCTCAGACTAGGAAAGAGGATACCCGTATAAAGAAGTTCAGGAAGAGGGTTGAGACCCATGGAGACGAAGATGATGAGGCATAGTGCTTATACTCTTCTTCTTCTTGATAGAATTCAGTTTTATTTCTGATGGTAGTTAAGGATGAGGAGGATGATAGACGGGTTCGGAGACGAACATCCCAGGACCAAGATGACAGTGACAACTCTGAGTCGGAAGAAGAAATACTTCGGGACCAAAGAGAGAGGGAGGAGTTAGAACGACATATCAGAGAGCGAGATGCTGCCGGGACTAGAAAGTTGGCAGAGCCAAAATTAACAAGGAAGGAGGAAGAAGAAGCAATCAGGAGGGCTGATGCATTGGAGCAAGATGACATTGGATCTTTAAGGAAAGTTTCAAGGCGAGAATACTTGAAGAAAAGGGAGCAGAAGAAGCTAGAGGAACTCCGAGACGATTTAGAAGATGAACAATACTTGTTTGAGGGAGTGAAGCTGACAGAAGCAGAGGAACGTGAGCTAAGATATAAGAAGGAAATATATGAACTTGTTAAGAAACGATCAGAAGATACCGGTGACATGGACGAGTATAGGATACCTGATGCTTATGATCTTGAAGGTGGTGTAAATCAGGAAAAGAGGTTTTCGGTGGCTTCGCAGCGATACAGGGATCCAGATGCTGCTGAAAAGATGAATCCTTTTGCTGAACAAGAGGCATGGGAGGAACATCAGATTGGGAAGGCGAACCTTAAATTTGGGTCAAAAGATAGAAAGTCAAGATCTGATGACTACCAATTTGTGTTTGAAGACCAAATTGAGTTCATAAAGGCAGCCGTAATGGATGGTGTTAATGTTGACCAAGAGCCTTCCACTGATTCAATAGAGAAAACTATGGCTAATTCAGCATTTGAAAAACTCCAGGAGGATAGGAAGACCCTACCAATGTATCCCTACAGGGATGATTTGCTCCAAGCTGTTAATGATCATCAGGTTCTTGTTATTGTTGGAGAGACGGGCTCCGGGAAGACCACCCAGATACCGCAGTATCTGCATGAGGCGGGATATACCAAACGTGGGAAGATTGGATGTACTCAACCTCGTCGAGTTGCTGCAATGAGTGTGGCTGCACGTGTTTCTCAAGAAATGGGAGTCAAACTTGGCCATGAGGTTGGCTACTCTATTCGGTTTGAAGACTGCACCTCTGAGAAAACGATTCTGAAATATATGACTGACGGGATGCTGTTACGAGAATTCCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTCATCATGGTCGACGAGGCACATGAAAGAACACTTTCAACGGACATTTTGTTTGGCTTGGTTAAGGATATTTCTCGATTTCGGCCTGATCTGAAGTTGCTAATATCAAGTGCTACTCTGGATGCAGAGAAGTTCAGTGATTATTTTGACTGTGCTCCAATTTTTAAAATTCCTGGAAGGCGGTTTCCAGTTGAGATACACTATACGAAAGCTCCAGAGGCTGATTACTTGGACGCTGCAGTAGTCACCGCTCTTCAGATCCATGTAACTCAACCCCCAGGTGATGGTGACATATTAATCTTTTTGACTGGGCAGGAGGAGATTGAAACAGCAGAGGAGATCATTAAGCACCGGATAAAAGGCCTGGGGACAAAAATTGCTGAGCTGATAATTTGCCCAATATATGCAAATTTGCCAACAGAATTACAAGCCAAGATATTTGAGCCCACTCCTGAAGGTGCTCGTAAGGTTGTCCTGGCTACAAATATTGCTGAAACATCATTGACAATTGATGGGATTAAGTATGTTATTGATCCGGGTTTTTCTAAGATGAAGTCTTACAACCCTCGGACGGGAATGGAGTCATTATTGGTTGCTCCTATATCAAAGGCATCTGCGAACCAACGTGCTGGTCGATCTGGAAGAACAGGTCCTGGAAAATGCTTTCGGTTATACACTGCATATAATTACATGAATGATTTGGAAGATAACACAGTTCCAGAAATACAAAGGACCAACCTTGCAAATGTGGTGCTCTCTCTCAAGAGCCTTGGGATTCATGACTTGCTAAATTTTGACTTTATGGATCCCCCACCAGCAGAAGCTCTACTCAAAGCACTGGAGTTGCTTTTTGCCCTTAGTGCACTTAACAAGCTTGGCGAGTTGACTAAAGTTGGTAGAAGAATGGCTGAGTTTCCTCTAGATCCCATGCTGTCCAAGATGATTGTTGCCTCTGACAAGTACAAGTGCTCTGATGAAATAATAAGTATTGCTGCCATGCTTTCTGTGGGGAATTCAATCTTTTATCGTCCAAAGGACAAACAAGTCCATGCAGATAATGCACGGATGAATTTTCATGTGGGTAATGTGGGGGATCATATCGCGCTGCTAAAGGTTTACAGTTCCTGGAGGGAAACAAACTTTTCAACTCAGTGGTGCTATGAAAATTATATCCAGGTCAGAAGCATGAAGAGAGCAAGGGACATCCGAGATCAATTGGAAGGCCTGCTAGAAAGGGTGGAAATTGAATTGACTTCAAATGATAATGACTATGAAGCTATAAAGAAGGCTATAACATCAGGATTTTTCCCCCACTCTGCAAAACTACAGAAGAATGGATCTTATCGAACTATTAAACACCCCCAGACAGTTAATGTTCACCCCAGCTCAGGTTTAGCACAGGTGCTTCCCAGATGGGTTGTTTACCATGAGCTGGTCCTGACAACTAAGGAGTACATGCGGCAGGTTACTGAACTTAAACCAGACTGGCTTGTGGAAATAGCTCCTCACTACTATCAGTTAAAAGATGTCGAAGACTCTAGCTCGAAGAAAATGCCTCGTGGAACTGGGCGTGCATCTTAG
GCTGATGATGAAGATGACAATATTGTCGGTGTGGAAAGTAGTTCCGTTCCTTCTCAGACTAGGAAAGAGGATACCCGTATAAAGAAGTTCAGGAAGAGGGTTGAGACCCATGGAGACGAAGATGATGAGGCATAGTGCTTATACTCTTCTTCTTCTTGATAGAATTCAGTTTTATTTCTGATGGTAGTTAAGGATGAGGAGGATGATAGACGGGTTCGGAGACGAACATCCCAGGACCAAGATGACAGTGACAACTCTGAGTCGGAAGAAGAAATACTTCGGGACCAAAGAGAGAGGGAGGAGTTAGAACGACATATCAGAGAGCGAGATGCTGCCGGGACTAGAAAGTTGGCAGAGCCAAAATTAACAAGGAAGGAGGAAGAAGAAGCAATCAGGAGGGCTGATGCATTGGAGCAAGATGACATTGGATCTTTAAGGAAAGTTTCAAGGCGAGAATACTTGAAGAAAAGGGAGCAGAAGAAGCTAGAGGAACTCCGAGACGATTTAGAAGATGAACAATACTTGTTTGAGGGAGTGAAGCTGACAGAAGCAGAGGAACGTGAGCTAAGATATAAGAAGGAAATATATGAACTTGTTAAGAAACGATCAGAAGATACCGGTGACATGGACGAGTATAGGATACCTGATGCTTATGATCTTGAAGGTGGTGTAAATCAGGAAAAGAGGTTTTCGGTGGCTTCGCAGCGATACAGGGATCCAGATGCTGCTGAAAAGATGAATCCTTTTGCTGAACAAGAGGCATGGGAGGAACATCAGATTGGGAAGGCGAACCTTAAATTTGGGTCAAAAGATAGAAAGTCAAGATCTGATGACTACCAATTTGTGTTTGAAGACCAAATTGAGTTCATAAAGGCAGCCGTAATGGATGGTGTTAATGTTGACCAAGAGCCTTCCACTGATTCAATAGAGAAAACTATGGCTAATTCAGCATTTGAAAAACTCCAGGAGGATAGGAAGACCCTACCAATGTATCCCTACAGGGATGATTTGCTCCAAGCTGTTAATGATCATCAGGTTCTTGTTATTGTTGGAGAGACGGGCTCCGGGAAGACCACCCAGATACCGCAGTATCTGCATGAGGCGGGATATACCAAACGTGGGAAGATTGGATGTACTCAACCTCGTCGAGTTGCTGCAATGAGTGTGGCTGCACGTGTTTCTCAAGAAATGGGAGTCAAACTTGGCCATGAGGTTGGCTACTCTATTCGGTTTGAAGACTGCACCTCTGAGAAAACGATTCTGAAATATATGACTGACGGGATGCTGTTACGAGAATTCCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTCATCATGGTCGACGAGGCACATGAAAGAACACTTTCAACGGACATTTTGTTTGGCTTGGTTAAGGATATTTCTCGATTTCGGCCTGATCTGAAGTTGCTAATATCAAGTGCTACTCTGGATGCAGAGAAGTTCAGTGATTATTTTGACTGTGCTCCAATTTTTAAAATTCCTGGAAGGCGGTTTCCAGTTGAGATACACTATACGAAAGCTCCAGAGGCTGATTACTTGGACGCTGCAGTAGTCACCGCTCTTCAGATCCATGTAACTCAACCCCCAGGTGATGGTGACATATTAATCTTTTTGACTGGGCAGGAGGAGATTGAAACAGCAGAGGAGATCATTAAGCACCGGATAAAAGGCCTGGGGACAAAAATTGCTGAGCTGATAATTTGCCCAATATATGCAAATTTGCCAACAGAATTACAAGCCAAGATATTTGAGCCCACTCCTGAAGGTGCTCGTAAGGTTGTCCTGGCTACAAATATTGCTGAAACATCATTGACAATTGATGGGATTAAGTATGTTATTGATCCGGGTTTTTCTAAGATGAAGTCTTACAACCCTCGGACGGGAATGGAGTCATTATTGGTTGCTCCTATATCAAAGGCATCTGCGAACCAACGTGCTGGTCGATCTGGAAGAACAGGTCCTGGAAAATGCTTTCGGTTATACACTGCATATAATTACATGAATGATTTGGAAGATAACACAGTTCCAGAAATACAAAGGACCAACCTTGCAAATGTGGTGCTCTCTCTCAAGAGCCTTGGGATTCATGACTTGCTAAATTTTGACTTTATGGATCCCCCACCAGCAGAAGCTCTACTCAAAGCACTGGAGTTGCTTTTTGCCCTTAGTGCACTTAACAAGCTTGGCGAGTTGACTAAAGTTGGTAGAAGAATGGCTGAGTTTCCTCTAGATCCCATGCTGTCCAAGATGATTGTTGCCTCTGACAAGTACAAGTGCTCTGATGAAATAATAAGTATTGCTGCCATGCTTTCTGTGGGGAATTCAATCTTTTATCGTCCAAAGGACAAACAAGTCCATGCAGATAATGCACGGATGAATTTTCATGTGGGTAATGTGGGGGATCATATCGCGCTGCTAAAGGTTTACAGTTCCTGGAGGGAAACAAACTTTTCAACTCAGTGGTGCTATGAAAATTATATCCAGGTCAGAAGCATGAAGAGAGCAAGGGACATCCGAGATCAATTGGAAGGCCTGCTAGAAAGGGTGGAAATTGAATTGACTTCAAATGATAATGACTATGAAGCTATAAAGAAGGCTATAACATCAGGATTTTTCCCCCACTCTGCAAAACTACAGAAGAATGGATCTTATCGAACTATTAAACACCCCCAGACAGTTAATGTTCACCCCAGCTCAGGTTTAGCACAGGTGCTTCCCAGATGGGTTGTTTACCATGAGCTGGTCCTGACAACTAAGGAGTACATGCGGCAGGTTACTGAACTTAAACCAGACTGGCTTGTGGAAATAGCTCCTCACTACTATCAGTTAAAAGATGTCGAAGACTCTAGCTCGAAGAAAATGCCTCGTGGAACTGGGCGTGCATCTTAG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g115390.2.1 | SL2.50ch03:65108843..65124047 | 910 | - | n/a |
Add items to a list:
| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g115390.2 | SL2.50ch03:65108844..65124227 | 15,384 | - | n/a |
Add items to a list:
| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g115390.2.1.1 | SL2.50ch03:65124045..65124227 | 183 | - | n/a |
| exon | exon:Solyc03g115390.2.1.10 | SL2.50ch03:65118858..65118925 | 68 | - | 1 |
| exon | exon:Solyc03g115390.2.1.11 | SL2.50ch03:65118715..65118772 | 58 | - | 2 |
| exon | exon:Solyc03g115390.2.1.12 | SL2.50ch03:65118429..65118486 | 58 | - | 1 |
| exon | exon:Solyc03g115390.2.1.13 | SL2.50ch03:65118258..65118326 | 69 | - | n/a |
| exon | exon:Solyc03g115390.2.1.14 | SL2.50ch03:65117196..65117264 | 69 | - | n/a |
| exon | exon:Solyc03g115390.2.1.15 | SL2.50ch03:65116974..65117063 | 90 | - | n/a |
| exon | exon:Solyc03g115390.2.1.16 | SL2.50ch03:65115237..65115323 | 87 | - | n/a |
| exon | exon:Solyc03g115390.2.1.17 | SL2.50ch03:65114940..65115055 | 116 | - | n/a |
| exon | exon:Solyc03g115390.2.1.18 | SL2.50ch03:65114792..65114858 | 67 | - | 1 |
| exon | exon:Solyc03g115390.2.1.19 | SL2.50ch03:65113172..65114218 | 1,047 | - | n/a |
| exon | exon:Solyc03g115390.2.1.2 | SL2.50ch03:65123899..65123976 | 78 | - | n/a |
| exon | exon:Solyc03g115390.2.1.20 | SL2.50ch03:65112608..65112670 | 63 | - | n/a |
| exon | exon:Solyc03g115390.2.1.21 | SL2.50ch03:65111839..65112063 | 225 | - | n/a |
| exon | exon:Solyc03g115390.2.1.22 | SL2.50ch03:65110503..65110565 | 63 | - | n/a |
| exon | exon:Solyc03g115390.2.1.23 | SL2.50ch03:65110328..65110400 | 73 | - | n/a |
| exon | exon:Solyc03g115390.2.1.24 | SL2.50ch03:65108844..65108887 | 44 | - | 2 |
| exon | exon:Solyc03g115390.2.1.3 | SL2.50ch03:65123708..65123794 | 87 | - | n/a |
| exon | exon:Solyc03g115390.2.1.4 | SL2.50ch03:65122638..65122671 | 34 | - | n/a |
| exon | exon:Solyc03g115390.2.1.5 | SL2.50ch03:65122466..65122520 | 55 | - | 2 |
| exon | exon:Solyc03g115390.2.1.6 | SL2.50ch03:65121309..65121368 | 60 | - | 1 |
| exon | exon:Solyc03g115390.2.1.7 | SL2.50ch03:65121099..65121170 | 72 | - | 1 |
| exon | exon:Solyc03g115390.2.1.8 | SL2.50ch03:65120461..65120524 | 64 | - | 1 |
| exon | exon:Solyc03g115390.2.1.9 | SL2.50ch03:65119062..65119141 | 80 | - | n/a |
| intron | intron:Solyc03g115390.2.1.10 | SL2.50ch03:65118926..65119061 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.11 | SL2.50ch03:65118773..65118857 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.12 | SL2.50ch03:65118487..65118714 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.13 | SL2.50ch03:65118327..65118428 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.14 | SL2.50ch03:65117265..65118257 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.15 | SL2.50ch03:65117064..65117195 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.16 | SL2.50ch03:65115324..65116973 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.17 | SL2.50ch03:65115056..65115236 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.18 | SL2.50ch03:65114859..65114939 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.19 | SL2.50ch03:65114219..65114791 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.2 | SL2.50ch03:65123977..65124044 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.20 | SL2.50ch03:65112671..65113171 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.21 | SL2.50ch03:65112064..65112607 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.22 | SL2.50ch03:65110566..65111838 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.23 | SL2.50ch03:65110401..65110502 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.24 | SL2.50ch03:65108888..65110327 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.3 | SL2.50ch03:65123795..65123898 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.4 | SL2.50ch03:65122672..65123707 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.5 | SL2.50ch03:65122521..65122637 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.6 | SL2.50ch03:65121369..65122465 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.7 | SL2.50ch03:65121171..65121308 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.8 | SL2.50ch03:65120525..65121098 | n/a | - | n/a |
| intron | intron:Solyc03g115390.2.1.9 | SL2.50ch03:65119142..65120460 | n/a | - | n/a |
Add items to a list:
| Related views |
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
