Solanum lycopersicum mRNA Solyc03g116500.2.1

mRNA details  
Name
Solyc03g116500.2.1
Type
mRNA
Length
1,756
Organism
Solanum lycopersicum
Description
Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
Location(s)
SL2.50ch03:65900461..65904769
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005975
Length
4309
Nb exon
9
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g116500.2.1 Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28

ATGTAGCCGACAGTGATTTTGACCTTGTCTAGTACTACTCTGTTAAGTTACAAAAGTGCTTCCCACTAATGGAAAATGGGGAAGATGGCATCCTCCTCCATTTCTTCCTTTAATTTCTCGTCCTATTCCAAATCTGTTGCTCTGTTTCTGTCACTCTACAGTCTCTATTTCCTCTTGATTTCTGCAAATGTAAGTGGATTTGAGTCACTCTTACAGCTACTTCCAGCATCTGCTTCTTTGAGGACCAAATCGGAATCCCTTTTTCGAGTCAACGATTTTGGAGCTACCGGAGATGGGATTACCGATGACACTAAGTCTTTTAAAGATGTTTGGGATATGGCCTGCTCGTCACCATCACATGCAAAGATTGTTATCCCTGCTGGTTATTCTTTCTTAGTCCGACAAATTAATTTTGCTGGTCCTTGTCGGTCAAAGGTGTCTATACGGATTGCAGGTACTATTTTAGCACCAAAGGATCCTGACGTCTGGGATGACTTGAATCCACGAAAATGGATCTATTTCTTTAAAGTAAAACACCTGACAGTAGAAGGAGGAGGAATTATAGATGGTATGGGCCAGGAGTGGTGGGCTCGGTCATGCAAGGTCAACAGAACAAATCCTTGTCATCATGCTCCAACGGCTTTAACTTTCCACAAATGCAACAACCTGAAGGTCAAGAACATAAAGATCTTTAATAGTCAACAAATGCATTTAGCATTTACTGGTTGCAAACATGTTACAATATCACAACTCGTAGTCAAAGCCCCAGGTGATAGCCCTAACACCGATGCAATCCACATAAGTTCATCTACACAGGTCAATGTCAAGGATTGCATTATTGGCACAGGAGATGACTGCATATCTATTGTCGGCAATTCATCACGGATCAAAGTCAAAGACATTGTGTGTGGGCCAGGCCATGGTATAAGCATTGGAAGCTTGGGAAAGTCAAATTCATTTTCTCAGGTTTACAATGTTCATGTTAATGGAGCATCTATTTCCAACACTGAGAACGGGGTTAGAATAAAGACTTGGCAGGGTGGTTCTGGGTTTGTCAAAAAGGTTTCTTTCGAGAATGTTTGGATGGAAAATGTCTCAAATCCTATCATAATCGACCAATATTATTGTGATTCTAGGAAACCTTGTTCAAACAAGACTTCAAACATTCACATTGACAACATATCCTTTATGGGTATTAAAGGAACTTCAGCTACAGAAAGGGCAATAACACTAGCCTGTAGCGACAGCTTCCCCTGCAGAAGGTTGTACTTGGAAGATATTCAACTTACTTCATCTTCTGGGGATCCTACAACATTTTTTTGCTGGCAGGCATATGGCACAACCTCAGGTTTAAATTATCCCCCTCCTTGCTTTCCTTGTAATGACGGCATTCTTCAGCCAAAATTTTTATCTAACTGGAGTCAATCGATATGATGTCTTCTATTGTAAGTGTACAAATGTCTCCACCATATATCATCGAAAGCTGCTAAATTCGTTGTCATTGATATTCATTTTCCTGAGCGAAGCTAGTTAACTTATCCAGAGGAACAGTATAGTCCATGACGTACTGATGAGTAGCTTGTCCAAGTACTAATGTTTATGGAAGAAAATCTGAGTGTTGATTAATGGATTGTTATTGCTTCATTCATCTCTAAATAAAGTGCTTATTCCTTTTCATGTATCTTCATGAAAAAAGAGAGTACGCTATCTAAGTAATTGGATGACAAAACAGGAAATGCTTCGTACATGTATGTAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g116500.2.1SL2.50ch03:65900535..65904447453+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g116500.2SL2.50ch03:65900461..659047694,309+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g116500.2.1.1SL2.50ch03:65900461..65900775315+n/a
exonexon:Solyc03g116500.2.1.2SL2.50ch03:65901671..65901802132+n/a
exonexon:Solyc03g116500.2.1.3SL2.50ch03:65901888..65902058171+n/a
exonexon:Solyc03g116500.2.1.4SL2.50ch03:65902142..6590216221+n/a
exonexon:Solyc03g116500.2.1.5SL2.50ch03:65902292..65902499208+n/a
exonexon:Solyc03g116500.2.1.6SL2.50ch03:65903014..6590309582+n/a
exonexon:Solyc03g116500.2.1.7SL2.50ch03:65903167..65903275109+2
exonexon:Solyc03g116500.2.1.8SL2.50ch03:65903434..65903550117+1
exonexon:Solyc03g116500.2.1.9SL2.50ch03:65904169..65904769601+n/a
intronintron:Solyc03g116500.2.1.1SL2.50ch03:65900776..65901670n/a+n/a
intronintron:Solyc03g116500.2.1.2SL2.50ch03:65901803..65901887n/a+n/a
intronintron:Solyc03g116500.2.1.3SL2.50ch03:65902059..65902141n/a+n/a
intronintron:Solyc03g116500.2.1.4SL2.50ch03:65902163..65902291n/a+n/a
intronintron:Solyc03g116500.2.1.5SL2.50ch03:65902500..65903013n/a+n/a
intronintron:Solyc03g116500.2.1.6SL2.50ch03:65903096..65903166n/a+n/a
intronintron:Solyc03g116500.2.1.7SL2.50ch03:65903276..65903433n/a+n/a
intronintron:Solyc03g116500.2.1.8SL2.50ch03:65903551..65904168n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17774657%2Fdetails feature 17774657
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