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Solanum lycopersicum mRNA Solyc05g013280.2.1

mRNA details  
Name
Solyc05g013280.2.1
Type
mRNA
Length
5,773
Organism
Solanum lycopersicum
Description
Cc-nbs-lrr, resistance protein with an R1 specific domain
Location(s)
SL2.50ch05:6379863..6386810
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006952
  • GO:0006915
Length
6948
Nb exon
4
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g013280.2.1 Cc-nbs-lrr, resistance protein with an R1 specific domain

ATGGCCAAGGAGTGTCGCGATGCAATAGGTACTATAAACCTTGTGAAGGGCCAGCATTTAGACAGAAGGACCACTAATCAATTGGAGGATGCTATAAAGCACCTAACACATGTTGCTGTATTTCTCACAAATCTGGAGAAGCGTCACCCTGCTAATGGAATATCTGTACATCTTAGGCCTCTATTTTTAGAAGCTCATGATGGCTTTTCTCTGATGTGTTCTCATCCTCCTCGTTCTCAGTTTACCGTTAAACTGGATAACATTGCTGAGAAATTCAAATCTGCAAAGGCGTCAAGATCAACAAGGCAAGTGATCCCAGAGCTGCTGCAAATAATTGAACCCGAGAATATTGCTAAGCGAATCAAAGCTTCAAAGCCATCAAGATCATCTAGCCCAATCACTGTGGATATGGTGGGGTTTATCGAATCCTTGCTTGGTTCTGTTCATCGTGCATTGTTCTTTATCAGTGCAGGGCCTCCTGTGTCTATGCTTGACAAGAAGCTTCGACATCTACAAGTCTTCTTTAGACTAATTTCAAAGCGGGGCATTGAGCATGAGAGTATGAAGGATCTCTTCTACCATGTTGAGGATGTAGCTTACACTGCAGCACAACTATGTGTCTTGGGGTCGAGCTGCCATATGGATAACGAGTTCTCTAAATTGCTGGAAAGGATAAGTCGTCCTTTTAGCCCAGGATTGAGGCTGGTTTATCTCAATGCCTTGATAGGGTTAAATTCATCAAGATCAAAGACTACAATGAATGCCAAGTATATGCTTGATTTTGTTAGTGCTCTCCAAGATGATCTGAGACTAAGATGTGATAATCGAATTCGATGGCTCCAACGAGGACTTTCTTACCTTTGTCGATTCCTCAGGGACATAGAATCTTATCCTGTTTCACATCGACAACTGATTTCTCTTCAATTGAATATGGAAGATCTGGCTATTGGGTCTGCAAATGCCATCTACTCCTATGATGAGGATATGGATAAGACTAGTGAAATAGACCATGAGCTTTTTCATTTGCAAATGAAGTTTAATTATGTTAAAGTAGAGGTTGATCTGATTCGTCTACAAAACATTCAAGGCACCATAATAGTTCCTATGAAAGATCTGATTGACTATGTTTGGGAAGAGCTGATGTTCTTTAGAAGTTATTTCATGGATGCGTTCGACCAGTGTAAAGAGCAGACCAGGATAACTGTTATTTTGAACTATATTCAGTCTGCAGTTAGTCAAGCATGGTCAGTCTGTGATTCTCTTTGTCATGACTTGAATCAAAATGACTTGGCCAGGGAAATTAATTGCTTGCATTTTCAATTGCTTCTTAAGTTCAAGTTTATCAAGGTCGCTATTAGACAAATGTGTCCCAGCATTTCTGCATCATCAACACCAGACCATCCTATGATAGATCTGCTGAACTTTCTTCCCATGAACTTTGAGGCCATTGATTCCTATTCCAGCATGCTAAAAGCCTCCTTTCCATCTTCCCCACATCGTCCTAATAGGGATGCAGAATCCCCCAATACATCATTCTTATGTGGTCCCAATACAGATGTGTACTCCTTCTATTCATCATCCTCACGTATTCCCAAGATGGATGAGATATTGAAGAGGTTTCATGAATATATTCTTGTCAATCTGCTACGGAAGGATGAAACCAATTTGACATTTACTATTGCAGATGAGGTCAAAAAGTTTTATGATGGGCTGTTGCTCATGGTTACATATCTTATTGAACCTCCAGTTCCTCACACTGAATGCAGGAAGCAAAATGATCTCTCAATGCGACATGAAGCTGTTGCAATTGAGGCGGAATCTGCTGTGTGTTTACATTATGAGGATAATATGAATAACAACAGGTGTAGGGAGATCAATCAGGTACTTCAATTTTTGACTGTGACTTTCTGGCTTATCAAGTCTGAGGGTAACTTGATGGATCTACTGAAGCACAAATCCACTTTGGGAAATCAAGTTCTAGATCTGATTGAGAGTGCTCATGAAGAGCTTATTCTCCTTAGATCTATTCTCATGGATCTTCTTAGGAAAAAGCTTTACAGATTGGATGATCTCTTAATGCATGCTGAAGTGACTGCAAAAAGGTTAGCAATATTCAGTGGTTCTTGTTATGAATATTTCATGAACGGAAGCAGCACTGAGAAAATGAGGCCCTTGTTATCTGATTTTCTGCAAGAGATTGAGTCTGTCAAGGTAGAGTTCAGAAATGTTTGCTTGCAAGTTCTGGATATATCACCTTTTTCCCTGACAGATGGAGAAGGCCTTGTTAATTTCTTATTAAAAAACCAGGCCAAGGTGCCGAATGATGATGCTGTTTCTTCTGATGGAAGTTTAGAGGATGCAAGCAGCACTGAGAAAATGGGACTTCCATCTGATTTTCTCCGAGAGATTGAGTCTGTTGAGATAAAGGAGGCCAGAAAATTATATGATCAAGTTTTGGATGCAACACATTGTGAGACGAGTAAGACAGATGGAAAAAGCTTTATCAACATTATGTTAACCCAACAGGACAAGGTGCTGGACTATGATGCTGGTTCAGTCTCTTATCTTCTTAACCAAATCTCAGTAGTTAAAGACAAACTATTGCACATTGGCTCTTTACTTGTAGATATTGTACAGTACCGGAATATGCATATAGAACTTACAGATCTCGCTGAACGTGTTCAAGATAAAAACTACATTTGTTTCTTCTCTGTCAAGGGTTATATTCCTGCTTGGTATTACACACTATATCTCTCTGATGTCAAGCAATTGCTTAAGTTTGTTGAGGCAGAGGTAAAGATTATTTGTCTGAAAGTACCAGATTCTTCAAGTTATAGCTTCCCTAAGACAAATGGATTAGGATATCTCAATTGCTTTTTAGGCAAATTGGAGGAGCTTTTACGTTCTAAGCTCGATTTGATAATCGACTTAAAACATCAGATTGAATCAGTCAAGGAGGGCTTATTGTGCCTAAGATCATTCATTGATCATTTTTCAGAAAGCTATGATGAGCATGATGAAGCTTGTGGTCTTATAGCAAGAGTTTCTGTAATGGCATACAAGGCTGAGTATGTCATTGACTCATGCTTGGCCTATTCTCATCCACTCTGGTACAAAGTTCTTTGGATTTCTGAAGTTCTTGAGAATATTAAGCTTGTAAATAAAGTTGTTGGGGAGACATGTGAAAGAAGGAACACTGAAGTTACTGTGCATGAAGTTGCAAAGACTACCACTAATGTAGCACCATCTTTTTCAGCTTATACTCAAAGAGCAAACGAAGAAATGGAGGGTTTTCAGGATACAATAGATGAATTAAAGGATAAACTACTTGGAGGATCACCTGAGCTTGATGTCATCTCAATCGTTGGCATGCCAGGATTGGGCAAGACTACACTAGCAAAGAAGATTTACAATGATCCAGAAGTCACCTCTCGCTTCGATGTCCATGCTCAATGTGTTGTGACTCAATTATATTCATGGAGAGAGTTGTTGCTCACCATTTTGAATGATGTGCTTGAGCCTTCTGATCGCAATGAAAAAGAAGATGGAGAAATAGCTGATGAGCTACGCCGATTTTTGTTGACCAAGAGATTCTTGATTCTCATTGATGATGTGTGGGACTATAAAGTGTGGGACAATCTATGTATGTGCTTCAGTGATGTTTCAAATAGGAGTAGAATTATCCTAACAACCCGCTTGAATGATGTCGCCGAATATGTCAAATGTGAAAGTGATCCCCATCATCTTCGTTTATTCAGAGATGACGAGAGTTGGACATTATTACAGAAAGAAGTCTTTCAAGGAGAGAGCTGTCCACCTGAACTTGAAGATGTGGGATTTGAAATATCAAAAAGTTGTAGAGGGTTGCCTCTCTCAGTTGTGTTAGTAGCTGGTGTTCTGAAACAGAAAAAGAAGACACTAGATTCATGGAAAGTAGTAGAACAAAGTCTAAGTTCCCAGAGGATTGGCAGCTTGGAAGAGAGCATATCTATAATTGGATTCAGTTACAAGAATTTACCACACTATCTTAAGCCTTGTTTTCTCTATTTTGGAGGATTTTTGCAGGGAAAGGATATTCATGTCTCAAAAATGACCAAGTTGTGGGTAGCTGAAGGGTTTGTACAAGCAAACAACGAAAATGGACAAGAAGATACCGCACAAGGTTTCTTGGACGATCTTATTGGTAGGAATCTGGTGATGGCCATGGAGAAGAGACCTAATGCCAAGGTGAAAACGTGCCGCATTCATGATTTGTTGCATAAATTCTGCATGGAAAAGGCCAAACAAGAGGATTTCCTTCTCCAGATCAATAGTGGAGAAGGTGTATTTCCTGAACGATTGGAAGAATACCGATTGTTCGTTCATTCTTACCAAGATGAAATTGATCTGTGGCGCCCATCTCGCTCTAATGTCCGCTCTTTACTATTCAATGCAATTGATCCAGATAACTTGTTATGGCCGCGTGATATCTCCTTCATTTTTGAGAGCTTCAAGCTTGTTAAAGTGTTGGATTTGGAATCATTCAACATTGGTGGTACTTTTCCCACTGAAATACAATATCTAATTCAGATGAAGTACTTTGCGGCCCAAACTGATGCAAATTCAATTCCTTCATCTATAGCTAAGCTTGAAAATCTTGAGACTTTTGTCGTAAGAGGATTGGGAGGAGAGATGATATTACCTTGTTCACTTCTGAAGATGGTGAAATTGAGGCATATACATGTAAATGATCGGGTTTCTTTTGGTTTGCATGAGAACATGGATGTTTTAACTGGTAACTCACAATTATCTAATTTGGAAACCTTTTCTACTCCGCGTCTCTTTTATGGTAAAGACGCAGAGAAGATTTTGAGGAAGATGCCAAAATTGAGAAAATTGAGTTGCATATTTTCAGGGACATTTGGTTATTCAAGGAAATTGAAGGGTAGGTGTGTTCGTTTTCCCAGATTAGATTTTCTAAGTCACCTTGAGTCCCTCAAGCTGGTTTCGAACAGCTATCCAGCCAAACTTCCTCACAAGTTCAATTTCCCCTCGCAACTAAGGGAACTGACTTTATCAAAGTTCCGTCTACCTTGGACCCAAATTTCGATCATTGCAGAACTGCCCAACTTGGTGATTCTTAAGTTATTGCTCAGAGCCTTTGAAGGGGATCACTGGGAAGTGAAAGATTCAGAGTTCCTAGAACTCAAATACTTAAAACTGGACAACCTCAAAGTTGTACAATGGTCCATCTCTGATGATGCTTTTCCTAAGCTTGAACATTTGGTTTTAACGAAATGTAAGCATCTTGAGAAAATCCCTTCTCGTTTTGAAGATGCTGTTTGTCTAAATAGAGTTGAGGTGAACTGGTGCAACTGGAATGTTGCCAATTCAGCCCAAGATATTCAAACTATGCAACATGAAGTTATAGCAAATGATTCATTCACAGTTACTATACAGCCTCCAGATTGGTCTAAAGAACAGCCCCTTGACTCTTAGCAAAGAGGTAGCAGAAGCTAAAGTTCAAGGCATTTTGTTTATTTCTAGAACAAGTGGAGTTCTTATGTTGAATTCTTGAAAAGAAGAAGAATCAGGAGCAGCATGGCAACATTTTCAACTATCACTCAAGCAATGTAAAAAATGGAGGTTCTACGAGCGGTACATGTAAGAGTTTTGTGCACACAAGAGGTTCTGAGACTTGAACCATCCATGTCCAAGGCAGTTGAGATGCTAGTAAAGAAAGAAGAAGATGAGCCTGCACAAATTAATCCTCCCTGTATGAATGAGAGAATGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g013280.2.1SL2.50ch05:6379862..63854531,826+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g013280.2SL2.50ch05:6379863..63868106,948+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g013280.2.1.1SL2.50ch05:6379863..63841754,313+n/a
exonexon:Solyc05g013280.2.1.2SL2.50ch05:6384289..63854581,170+1
exonexon:Solyc05g013280.2.1.3SL2.50ch05:6385934..638602996+n/a
exonexon:Solyc05g013280.2.1.4SL2.50ch05:6386617..6386810194+n/a
intronintron:Solyc05g013280.2.1.1SL2.50ch05:6384176..6384288n/a+n/a
intronintron:Solyc05g013280.2.1.2SL2.50ch05:6385459..6385933n/a+n/a
intronintron:Solyc05g013280.2.1.3SL2.50ch05:6386030..6386616n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17819770%2Fdetails feature 17819770
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