Sol Genomics Network

Solanum lycopersicum gene Solyc07g052670.2

Name Solyc07g052670.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc07g052670	Length 4,579

Description

Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

Location(s)

SL2.50ch07:61115970..61120548

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4579

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc07g052670.2.1	SL2.50ch07:61115970..61120548	1,388	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc07g052670.2 SL2.50ch07:61120548..61115970 (sequence from reverse strand)
CAAATAGTATAATAGCAATGAAAACGATGATTGATGAACGATAGCTACATGTCTAGTGAAAAGTAGCACAAATCATGCTGCTCTTCCTAGTCCAGCCAAAACAGCGTTTACTTTTTGAGTTAGAAAATGCAGTAATGACGAAATACAACTTTGTTAATTCTTCCATTGATGCTGCCGTCAGTTCTCCTCCATCCATATCCACACAAAAAAAATACTTTGTTTTTTTGTTATATATATATATGATGTTGCTATTTCAACTGCTACTGTAGTAGATGATTGCTTATACTTGTGGTTTTGTAGTGTGCAGAGCAAAAGGGAAGGGGGAAATTTGAAGAAGGGAATTAGGTCATGGAGGTCGATTCTAGTGGGAATCCTAATTGGTTATTTGATTATGAGTTGATGACGGATATTACTTCTGCTGCATCTGTTACCGTCGCTGAGTTTCAGTCTCCGGCTACTATTGATTTCAGCTGGCCTGCTCAAACGATCTATGCTTCTTCTAATCTCATGTGAGTCTGCTCTTCCGCCCTTTTTTAATTCTTGTCAATTTGTTGTACAATTACTCTCATGGTCATTTTTTTTCTTTTCGAATGAGGCTTATATGGTTTGAACACGTGAAAAGGAGAGACAGTGACTTGAGTTGAAGGAGAAGTAAAGGGAGGCTGAAGAAATATTTGGAGAGGTGATTACACAAGACTTGATGCATCTTTAGATTACGAGGGGATGACCTTAGATAGGGATATGGAGGTCATGGATAGTGGTAGATGGGTTATTGGTAGTTGAGTGTTGTCTTACTTACGGAGGGATAGACTTGGTGGTAGTTTGGAGCATAGTATGTGCTTCTCCTTTCATAGCACTAGTATTAGTATTGCTTTGAATTGCTTTCCTTTCCTTTATTTGAACTGAGGATCTAGTGGAAACAATCTCTCTACCTCCACAAAGGTAGGGTAAGGTCTGCCTACACACTACTCTCTACATACTCCACTTGTGGGATTGCACTGAGATTGTTGTTGTTGTTGAATTTTAAAGAACAATAAAGAAAGTTTTATGTTAGGATTACAACTTCTCTTTTGACTTAAAACATGTGAGCTTTGTATATTAAATTCATTGAAATCGAGATGAAGGGGAAGGCGGAAGGTTGTGGTAAATTTGACACCTAGTTTCAAATAATCTTATCATAGAGTAGGAGGTAGCTTCAACAAGGAATTGTCACTTCAGCCAGTCTGTAGTTTGAAAAGTTGTTCCTTTCGAGCATAAGGAAAAAGTGCCTATCACTTTGTGTTGAGGTTATAGATTCCTCTCTAGATTACATTACTTTAAGATATAGAAAGACTGAAATTATGTTCGGTAAATATGTTTAGTAGGATTTATATCTATCAGCTTTTCCACCAAGGTTATTGTTAGTAATAACTATGAAAGACAAATGTCTAATCTTATGGGTGCGTACATGTTTAATGTCTCGAAAGGATGATGCAAAGTAGTGGGACATCAACACTTTACTGAAGCTGGTGCTTTGCTTTTACCATATCCATATTCTGATGGTCATCTATCTCTTTCAGTACTGAAACAGATTACACATTTGCGGATTCAGAAGTTAGCAAGGAGGCAAGCTCACGAAAGCGGTAAATAAATTATCCATTTCTTTTATATCATGGTTTGATAGGTTTGATGAACTCTTTTTATTACATTCTTCTTGTTTTAGAGATCTGGATCTGTTTATATATCCTATGTTCTAGTAAGGAGAAAACCTATTTGGCTATGGTTGTCCACTCTTAAATGTACTCATTTAAGAATTTTTCTTTCAAAATATGTGTATCCTACAACTATGTCACAGGCTAAAATGAAGTCTTGAATAGCCTTTCCTCCATTATTCCTAATATAACCATATCCCCCATGTATTGGGTCAAAACTGTCGTTATCTTTACCTACATGACCATTTAGATCTCCACAAATAAAAATCTGTTGGTCGTCTGGAATACCTTGAACCAAGGTGCCCATATCTTCCAAATATTTAGTTTTTGTTTCCACATCTAGTCCTATTTAGGGAGAATAGGTGGTAATGATATTCATTGTTTGATTTCACATGCAAGACTTAATGAGATAACTCAATCCTCACCACACTTTCCCTCTACAACCTTGTCTTTAACTCTTGGTTTTAGAATAATTGAAGTCCACGCTTTATTTGCGCTTTGTGTTTAAAACCCCCAACTGATCTTAGAGCTTTTTTGCTCTTTTTGCTTTTGATAACACTGCACACCACAACTCTCCTCCTTTATATGGGTTTGAGACCGGCCATTTGAGCAAAAGCTCATACAGGCTCTTCCTCCCAATCACTCCTTTCAGTTTTATGTTTGTCTATCACTGAGGAGAAGTTCGTTGATTACTCAAGAAACCTATTTTCCTTGCGAGATTCTTGGTTGTAGACTTGTAGTCTAGTAAATTTGTCAGCACAATGATATCCTGATATATCAGACAAAACAGCTGCCTAGTTTCTTTATACTTCTTCTCTTTTCCTTTTTTACGAAAAAGCTATTGTTTATTCTTGTTGCTGAGAGTAAGATAATTTATTAATGATCTCAATACTAATAATTACAAAATAGGGTTTCTATGCAGTATCTTTCATGCCCGGTTCTCTTGCTAATCATCCTACTGAACTCAGGCATGAATATCAGATAATGTGACATATCGAAAAATTTTACATTCTGTTTCCTATTTTATGGAGAACCCATTTAGAGTACCAATCTGGTGTGGATTGGTGTTTTCTTGTTTCAAGTCTGTATAAGAGTTTTACTATTATAAGTGATAATTTCCATTTGAAGGACTATCATCTCAAATTTGAACTGTCTATGTGGAAATCTCTGTTTCAGGTTTGACAATCCAATCTATCTAATTGCTAAAAGGAAATCTCAACATTTGATAGAGCTTTGTAGATATCTTCAATTAATATGCAGCCTTTCCAATAGTCAGTTATGAAAATTTAGCTTCAATATACTGCATCCTATCTATTAGTATTCTTACATCACACCTTTTTTCAATTGTCTCATTCTGTTGGCGATTCTAAGATGGACACAGCTTATTTAGTTTCCAGAGTAAAATTCCTTTCATTATGGGCTCAAAGTAAACAGATAGTTTTTAGCAACTTTAGGATGACTGTACATGTGATTCTTGTTCTTCTATATCTATGTAGATCATCAAATGAGAAATAATGAAATTCACTTTCACAATGTTGAACCTGAACAAAATTTTCTTTATTTTAGAGTTGTGTATCACATAAATTTCTCATAGGATTCCTATGGGTCATGATCATACCATTGCTAGCCATCCTTGTCTATATCCTTGTCCAGTGTCATTAGTTCCAATGAAAATATCCTTCAAAAGGTTGGCCATTAAAGTGAGTTGCTAATAGCACTCCCCTGCATCCCCAAGAAACAAGAAAATGAAAAAGAAAGTTTCTTTATTAAAACTGGTTGTTTCAGATAGCATTTTCTAAACAAAGAACAATGCTGTTTGAACTGGTATCATTCATTTCTTTCTTGTATATCTACTTAACTGTACGTACAGGTTAAAAAGTGAATGTTGCAGCTCTCCGAGATCTAAGGCATGCAGAGAGAAATTGCGGAGGGACAGACTGAATGAGAGGCATGATCTCTCCTTCTAGATCTCTTTCTTTTGACAAATTCACTTTCTTATGAATTCTCACATCCAAATCTGACATCATATAGGTTCCTCGCATTGAGCTCTGTCCTTGATCCTGGAAGGCCACCAAAAACTGAGAAAGTTGCAATTCTAAGTGATGCTCAAAGGATGCTGATTGAGCTGCGAACTGAAACCCAGAAGCTGAAGGAGTCAAATGAGGAGCTGCAAGAGAAGATAAAAGAACTTAAGGTGTAGTTTTAATTCTAGTGCCACTGAATGTCAGCTGTACTCTCTGATCTTCCATCTGTGCTAGTTTTCTTTGGCTCTCTGTTGAGGCACTTATAAAAGAAAAACCTATGTCTATTCAGGCAGAGAAGAATGAGCTCCGAGATGAAAAGCAAAGGCTAAAGGAAGAAAAGGATAATTTGGAGCAGCAGGTTAAAAGCTTAGCTTCTAAAGCAGGATTTCTCTCCCATCCTTCTGCCATGGGAGCTGCATTTACTGCACAAGGACAAGTTGCTGCAGGCAACAAATTGATGCCTTTCATTGGTTATCCCAGTGTTGCGATGTGGCAATTCATGCAACCTGCTGTTGTTGACACATCTCAAGATCATGTGCTCCGTCCTCCAGTTGCTTAAGCTGGATTTGCCAGGTGACTTGCTACTGGAGCTTTGCTCTTTTTGTTGCTCCTGTGAGTGCTAAAAGTGACAAACAACTGAGACAATTTGCTGGTTGTATTTGTATGTCTAGCTTTTATGTATGTGTCAGTCTTGATGGTTTGCTTAATCATGTATATGGCGGGTGTATACTCACCCGAAAAACAATTATGTATTATGATTCCCTAGATGGGATTCCTTCTGAAATAATTAAACTTGGTTGTATGCACATTATACCCTGTTTTAGCTAAGCATGCTTCTGCACTCAGTAGTATATTCTCCTCTGG

Download sequence region

Download sequence (4.5Kb)

Get flanking sequences on SL2.50ch07

mRNA Solyc07g052670.2.1

Ontology terms

terms associated with this mRNA

GO:0003700 – sequence-specific DNA binding transcription factor activity

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc07g052670.2.1	SL2.50ch07:61116274..61120200	245	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc07g052670.2	SL2.50ch07:61115970..61120548	4,579	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc07g052670.2.1.1	SL2.50ch07:61120040..61120548	509	-	1
exon	exon:Solyc07g052670.2.1.2	SL2.50ch07:61118927..61118989	63	-	1
exon	exon:Solyc07g052670.2.1.3	SL2.50ch07:61116910..61116987	78	-	1
exon	exon:Solyc07g052670.2.1.4	SL2.50ch07:61116664..61116826	163	-	n/a
exon	exon:Solyc07g052670.2.1.5	SL2.50ch07:61115970..61116544	575	-	n/a
intron	intron:Solyc07g052670.2.1.2	SL2.50ch07:61118990..61120039	n/a	-	n/a
intron	intron:Solyc07g052670.2.1.3	SL2.50ch07:61116988..61118926	n/a	-	n/a
intron	intron:Solyc07g052670.2.1.4	SL2.50ch07:61116827..61116909	n/a	-	n/a
intron	intron:Solyc07g052670.2.1.5	SL2.50ch07:61116545..61116663	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlbHLH053 (bHLH transcription factor 053)

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17881913%2Fdetails feature 17881913

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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