Sol Genomics Network

Solanum lycopersicum gene Solyc08g066500.2

Name Solyc08g066500.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc08g066500	Length 5,516

Description

Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA

Location(s)

SL2.50ch08:55206372..55211887

GFF source

ITAG_eugene

From BOGAS: 1

Length: 5516

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc08g066500.2.1	SL2.50ch08:55206372..55211887	2,725	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc08g066500.2 SL2.50ch08:55211887..55206372 (sequence from reverse strand)
CTTGAAGTGATGATGGCTGTGACATCAAGCTGTAAAGACAAATTTGGGATGGATAGTGGTAAATATGTGAGGTACACTCCTGAGCAGGTAGAGGCTTTGGAGAGGTTGTATCATGAATGTCCAAAGCCTAGTTCACTCCGTCGCCAGCAGTTGATTCGGGAGTGTCCAATTCTGTCGAATATCGAGCCAAAACAGATCAAAGTTTGGTTCCAGAACAGAAGGTATTGGGGAAGTTGCTTTTTTTTTTTAGAGTTTCTTTGTTCTTATTATATTGGAAAAAATATTGTTATTATATAAGATGGTTATGGTATTGTGTTCCTGTAAATGTAGATGTAGAGAGAAGCAACGTAAAGAATCATCGCGCCTTCAAGGCGTGAACAGAAAATTGACTGCAATGAATAAGCTGTTGATGGAAGAGAACGATAGGTTGCAGAAGCAAGTTTCACAGTTGGTGTATGAGAATAGCTTTTTCCGCCAACAGACTCAAACTGTAAGCAATCTGTTGTTATTATCCAACTTAATGTTTCAATGTTAGAGAAATAATTTGAGCTGTAGTAAAGTTTGTGGTAACTGTCATATTTTTAAATTGCAGGCAGCCTTAGCCACCACAGACAACAATAGTTGTGAATCTGTGGTGACGAGTGGTCAACACAACTTGACCCCTCAGCGTCCACCAAGGGATGCAAGCCCTGCGGGGTAAGTAGATAATCACCAGAGTCCGATTTCCTTCTTTTTATTTTGTGTATGTGTTATTTTCCATAGCTTGTATGATGATATTTGAATATATTTCCAGACTTTTGTCCTTAGCAGAGGAAACTTTAACAGAGTTTTTATCAAAGGCAACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGGTTTGTTTCATTGCCTATCTTTCAATTTACAAAATTTTGGAGTGTTGTTTATCGACTTATAAATTGCATCAATACATCGTAAGTCGTGAGAAGTGTTTTTCTTAAACATAATTTCTACATGTATGACACTCTGGATGATTTGATCATGTACACACTTATATGCACAACGTTTCATTATATAATAGCTAATTTGAACATAAAATTCTGTCATTTATAATCTTAAAAATGTCTTTCTTTCATGCCTGCAGCCTGGTCCGGATTCCATTGGAATCATTGCAATTTCTCATGGTTGCTCAGGAGTAGCCTCGCGTGCTTGTGGCCTTGTGGGTCTAGAGCCTACAAGAGTAGGTTTCATCCTAAATAACTTGTTCAATTCAGTTTTGTATTTTCCCTACTGAAATTCTAAGTATATTTGTGCTTCTTTTTTATAAAGGTTGCTGAAATTCTTAAAGATCGGCCATCATGGTTTCGTGACTGCCGAGCAGTGGATGTTCTCAATGTGATGTCCACTGGAAACGGTGGAACCATTGAATTGCTATACATGCAGGTAAATATTAGAAAAAATTCTTCCCGTACTTTTTGTTGGTGTAACACAACTTTTCACTAAATATAGTATTTTGACTTTATTTCAGCTCTATGCACCTACTACACTGGCACCAGCTCGTGACTTTTGGTTAATGCGGTATACATCTGTTATGGAAGATGGTAGCCTTGTGGTATGTATCTAAGATCTTTGAGTCCCTCGTAAAATTATCAAATAAAAGCTGTTGCCTTATTACAATTGAAAGTCACAATACAAAGTAAAAATCCAGTTTTCCGTTGTTATTATGATGATGCAATATACGTTTTTCTATTGTAGATATGTGAAAGATCCCTGAACAACACTCAGAATGGTCCTAGTATGCCACCGGTGCAGAGTTTTGTGAGAGCAGATATACTGCCGAGTGGATATCTGATACGACCCTGTGAAGGAGGTGGTTCAATCATTCACATAGTTGACCATATGGATTTAGAGGTGTGTTAACTTGTAAATTACATGATTTTTCTTCTCCGTACTTATTTTCTAATATATGTTGCTAATAATCTTTGTCAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCACTGTATGAGTCATCAACATTGTTGTCGCAGAGGACAACTATGGCGGTAGGATTAAATTTCTGACTCTATATTTAACATAGAAAATCTCATTCTGAATTCCTAAGATAGATATCGAAACGAACTATAGTCACCGCAAGTTCTTAGTTGTGGTTTTGATGTTTAACATATTTCAGGCATTACGTCACTTGAGACAAATTTCTCAAGAAATTTCACATCCTACTGTCTCTGGCTGGGGAAGAAGACCTGCTGCGTTGCGCGCACTTGGTCAAAGATTGAGCAAGTTGGTCTTTCAATTCCTTATCTTCTTTTGACATCTTAACATTTTATTACCTTTGTGATCGAACTTCTGATTCGCATTGTGAAGGGGTTTTAACGAGGCCGTTAACGGTTTTACTGATGAGGGATGGTCTATGCTTGAAAGTGATGGCGTAGATGATGTTACTATTCTTGTGAACTCATCACCCAGCAAATTGATGGGTGCAAACATCTCTTATGCCAATGGATTTCCATCGATGAGCAGCGCTGTGCTTTGTGCCAAGGCTTCTATGCTTTTACAGGTACCAGTTTGTTGACCAAATTGATTTGAGCTAAGCTATGTGAATGGATTACGTAATAAGCTCATTCTTAAATGACATTAACATTCTGATTTAATAGGAGCAGTAAAATTTGTCTAAATGAAAGAACTGTTTTCATAAAATTTCTATTTCATTACCAAGGTTTAAAGCATGGGCAAGCGATGCAGTTTCAGTTTCTTGGTTAATCCAGAAACAGTAAAAATTTGCACGAAGAGCATATTGAGACTAAAAATTATGTGATATACTGCTACATACGTTCAACTATTTGAATAATTGTTTTTTTTTAACTGTGATTTATTCCAGCATTTTAAAAATATTTCATAACATAGTGGGTTCACAATACAATTTTTGTAGTTTCTAAAAATTTATATTTTTATTTAAAAGGAATCTGGGATTTGAAAGTACTCTCTTTGAGACGTAAAAGTTTTATTTTCGTCAATTGGATGCATTGTTGAAATTTCTGCATGTTCTTTAGATATTTTCCTGTATTCCATCTGGACCATGTTCAGTTTTAGCAATTTCCTGAAAGTTATTGCCATTTATGAAGATCCTAGTTTCCTCGGAAGCTAATGTTCTACTTCTGTTTCTTATTAACTCTCTTTCTTATAGAACCTGTTTCATCACATCTTGTCTTCTTTTGGCAGAACGTACCTCCACCCATTCTGCTAAGGTTCTTGCGGGAACACCGATCAGAATGGGCAGACAGTGGTATCGATGCTTATTCAGCTGCTGCAGTTAAAGCTGGTCCATGCAGCATACCAGTCACCCGAACTGGAAGTTTTGGTGGACAAATTATTCTTCCACTGGCTCACACAATTGAACATGAAGAGGCAAGTGACTATTTCAGAATTATCTCTAGTATCTTGCTAGAACGCCTTGATCTTACTTCTTCATTTGCATATATTATGTTTTATAGGTAAATATATTATTAATATTTTTTCCCTCTTAAAACAGTTTATGGAGGTGATAAGACTTGAAAGCATTGGCCACTATCAAGATGACATGATAATGCCTAGTGACATCTTCCTTCTGCAAGTACGTTTTTATTCTTAAAACAATTTGCATTACTCTATATTGTTACTTCCCTAATTGGATTTTGGCGCAAGAATTATTGTTGTAGCAGCTAATCATTGACTTTCACTTGTGAGTGTTAGTTCAGTTTTACGACGTCTAAGTCCCAACTGTCTACAATCTGCTGTTCAGTCTTTAAACCTATGTTTTACTTTCTGCCGTCTCTATGACAAACTGATCCTTTGTATTTGAAATGCACAGCTTTGTAATGGAGTGGACGAGAATGCTATTGGAACATGTGCAGAGCTCATGTTTGCTCCTATTGATGCCTCATTTGCTGATGATGCTCCTCTCCTTCCCTCTGGTTTTCGTATCATTCCTCTGGATTCCAAGGCGGTGAGTATACTTGCTAAATGTAATCTGGAAGTGCAAGTTTTTGCAACGTTTAGTAATTTACTTCTCAAGTCAATGCAGGATGCATCTAGTCCAAACCGCACACTTGATCTTGCATCAACTCTTGAGGTTGGACCAGCTGGAAGTCGACCAACTGGGGATCATTCCAAGAATTCTGGTAGCGCAAAATCGGTTATGACAATAGCATTTCAATTTGCATTTGAGATTCATCTTCAAGAAAGCATAGCTGCTATGGCACGTCAATATGTCCGCAGTATCATATCATCTGTTCAGAGGGTTGCTTTGGCTCTCTCTCCATCTCGTATTGGTTCTCTCCCTGGTCTAAGATCTCCACCTGGCACACCTGAAGCCCAGACTCTTGCCCGTTGGATTTGCCAAAGTTATAGGTATGTTGCTTGTCGCCACCTGATATAACCTCAAAACTAGAGCATTTCTTGTATTATGTGCATCTAGCAACTACTAGGAACAATCTCTGACTGGTTCTATTATTGTACTTTTACATTATTGCATGAATATTTCCAATTCTTATATGTTATCTTCTCTTGCAGATTCTTCTTAGGCGTGGAGCTGCTCAAATCTGCTAGCGGAGGAAGTGAATCCATCCTGAAAGAAATTTGGGATCACTCAGATGCTCTGATGTGTTGCTCTATGAAGGTATTAAATATCTAATTTTCATTAAGTTCAATTAAGTCGCAGTTTGAGGTTTACCATCAGATTCCGAGTTTTACTCAAGTAGTTGTTTGCTTCTTGCTTTGCAATGGTTAGGCGTTTTTCTTAAGAGCTGTACTTTTGATAACAGGCACTGCCAGTTTTCACATTCGCGAATGAGGCTGGACTTGACATGCTAGAAACCACCTTAGTAGCCCTTCAAGATATTAGTCTGGAAAAGATTTTCGATGACAATGGAAGAAAGGCTCTCTACTCTGAGCTTCCACAGATAATGCAGCAGGTATATATATATGTGTGTGTGTGCATTTTTCACTAGTCTAATTTAATTTCCTGCTTTTGTTCCTCTATTTATAATCTCAAAACCGACACGCTCTCTTTGTTGGTGAGACTGTGAGTAGCCAAGCTGTTTTCTATGTAATCGAAGCATCATTACTACTGCAACTCTATTTATGAAGTTTCAATGTGTAACTGGATATCATATCTTACATATGTTTTTGTAGGGTTTTGCATGTCTTCAAGGTGGTATCTGTTTGTCAAGTATGGGAAGGCCAATATCCTATGAGAGAGCAGTAGCTTGGAAAGTATTGAATGAAGAAGAAGATGCCCATTGTATATGTTTTATGTTTATCAATTGGTCTTTTGTCTGATATTATTTTGCACATCAATGTAGGAACTCATTAATGCAAACTTAGATCAACAACACTTCTTTTCTTTTTGAATCATACTTCATGGATCAACCTCCTTCCATTTTTTTACTTTCTTTTAATTATCTTTGGTTTTTAACTTACTCTTACTAGAAGCAATCTCACATTACATTTAGCTCACACATTCAGTGGGTTA

Download sequence region

Download sequence (5.4Kb)

Get flanking sequences on SL2.50ch08

mRNA Solyc08g066500.2.1

Ontology terms

terms associated with this mRNA

GO:0003700 – sequence-specific DNA binding transcription factor activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc08g066500.2.1 Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA
CTTGAAGTGATGATGGCTGTGACATCAAGCTGTAAAGACAAATTTGGGATGGATAGTGGTAAATATGTGAGGTACACTCCTGAGCAGGTAGAGGCTTTGGAGAGGTTGTATCATGAATGTCCAAAGCCTAGTTCACTCCGTCGCCAGCAGTTGATTCGGGAGTGTCCAATTCTGTCGAATATCGAGCCAAAACAGATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAACGTAAAGAATCATCGCGCCTTCAAGGCGTGAACAGAAAATTGACTGCAATGAATAAGCTGTTGATGGAAGAGAACGATAGGTTGCAGAAGCAAGTTTCACAGTTGGTGTATGAGAATAGCTTTTTCCGCCAACAGACTCAAACTGCAGCCTTAGCCACCACAGACAACAATAGTTGTGAATCTGTGGTGACGAGTGGTCAACACAACTTGACCCCTCAGCGTCCACCAAGGGATGCAAGCCCTGCGGGACTTTTGTCCTTAGCAGAGGAAACTTTAACAGAGTTTTTATCAAAGGCAACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCAATTTCTCATGGTTGCTCAGGAGTAGCCTCGCGTGCTTGTGGCCTTGTGGGTCTAGAGCCTACAAGAGTTGCTGAAATTCTTAAAGATCGGCCATCATGGTTTCGTGACTGCCGAGCAGTGGATGTTCTCAATGTGATGTCCACTGGAAACGGTGGAACCATTGAATTGCTATACATGCAGCTCTATGCACCTACTACACTGGCACCAGCTCGTGACTTTTGGTTAATGCGGTATACATCTGTTATGGAAGATGGTAGCCTTGTGATATGTGAAAGATCCCTGAACAACACTCAGAATGGTCCTAGTATGCCACCGGTGCAGAGTTTTGTGAGAGCAGATATACTGCCGAGTGGATATCTGATACGACCCTGTGAAGGAGGTGGTTCAATCATTCACATAGTTGACCATATGGATTTAGAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCACTGTATGAGTCATCAACATTGTTGTCGCAGAGGACAACTATGGCGGCATTACGTCACTTGAGACAAATTTCTCAAGAAATTTCACATCCTACTGTCTCTGGCTGGGGAAGAAGACCTGCTGCGTTGCGCGCACTTGGTCAAAGATTGAGCAAGGGTTTTAACGAGGCCGTTAACGGTTTTACTGATGAGGGATGGTCTATGCTTGAAAGTGATGGCGTAGATGATGTTACTATTCTTGTGAACTCATCACCCAGCAAATTGATGGGTGCAAACATCTCTTATGCCAATGGATTTCCATCGATGAGCAGCGCTGTGCTTTGTGCCAAGGCTTCTATGCTTTTACAGAACGTACCTCCACCCATTCTGCTAAGGTTCTTGCGGGAACACCGATCAGAATGGGCAGACAGTGGTATCGATGCTTATTCAGCTGCTGCAGTTAAAGCTGGTCCATGCAGCATACCAGTCACCCGAACTGGAAGTTTTGGTGGACAAATTATTCTTCCACTGGCTCACACAATTGAACATGAAGAGTTTATGGAGGTGATAAGACTTGAAAGCATTGGCCACTATCAAGATGACATGATAATGCCTAGTGACATCTTCCTTCTGCAACTTTGTAATGGAGTGGACGAGAATGCTATTGGAACATGTGCAGAGCTCATGTTTGCTCCTATTGATGCCTCATTTGCTGATGATGCTCCTCTCCTTCCCTCTGGTTTTCGTATCATTCCTCTGGATTCCAAGGCGGATGCATCTAGTCCAAACCGCACACTTGATCTTGCATCAACTCTTGAGGTTGGACCAGCTGGAAGTCGACCAACTGGGGATCATTCCAAGAATTCTGGTAGCGCAAAATCGGTTATGACAATAGCATTTCAATTTGCATTTGAGATTCATCTTCAAGAAAGCATAGCTGCTATGGCACGTCAATATGTCCGCAGTATCATATCATCTGTTCAGAGGGTTGCTTTGGCTCTCTCTCCATCTCGTATTGGTTCTCTCCCTGGTCTAAGATCTCCACCTGGCACACCTGAAGCCCAGACTCTTGCCCGTTGGATTTGCCAAAGTTATAGATTCTTCTTAGGCGTGGAGCTGCTCAAATCTGCTAGCGGAGGAAGTGAATCCATCCTGAAAGAAATTTGGGATCACTCAGATGCTCTGATGTGTTGCTCTATGAAGGCACTGCCAGTTTTCACATTCGCGAATGAGGCTGGACTTGACATGCTAGAAACCACCTTAGTAGCCCTTCAAGATATTAGTCTGGAAAAGATTTTCGATGACAATGGAAGAAAGGCTCTCTACTCTGAGCTTCCACAGATAATGCAGCAGGGTTTTGCATGTCTTCAAGGTGGTATCTGTTTGTCAAGTATGGGAAGGCCAATATCCTATGAGAGAGCAGTAGCTTGGAAAGTATTGAATGAAGAAGAAGATGCCCATTGTATATGTTTTATGTTTATCAATTGGTCTTTTGTCTGATATTATTTTGCACATCAATGTAGGAACTCATTAATGCAAACTTAGATCAACAACACTTCTTTTCTTTTTGAATCATACTTCATGGATCAACCTCCTTCCATTTTTTTACTTTCTTTTAATTATCTTTGGTTTTTAACTTACTCTTACTAGAAGCAATCTCACATTACATTTAGCTCACACATTCAGTGGGTTA

Download sequence (2.7Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc08g066500.2.1	SL2.50ch08:55206564..55211839	828	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc08g066500.2	SL2.50ch08:55206372..55211887	5,516	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc08g066500.2.1.1	SL2.50ch08:55211667..55211887	221	-	1
exon	exon:Solyc08g066500.2.1.10	SL2.50ch08:55209601..55209707	107	-	1
exon	exon:Solyc08g066500.2.1.11	SL2.50ch08:55209324..55209516	193	-	n/a
exon	exon:Solyc08g066500.2.1.12	SL2.50ch08:55208476..55208661	186	-	n/a
exon	exon:Solyc08g066500.2.1.13	SL2.50ch08:55208271..55208351	81	-	n/a
exon	exon:Solyc08g066500.2.1.14	SL2.50ch08:55207899..55208033	135	-	n/a
exon	exon:Solyc08g066500.2.1.15	SL2.50ch08:55207495..55207820	326	-	1
exon	exon:Solyc08g066500.2.1.16	SL2.50ch08:55207227..55207332	106	-	n/a
exon	exon:Solyc08g066500.2.1.17	SL2.50ch08:55206932..55207081	150	-	n/a
exon	exon:Solyc08g066500.2.1.18	SL2.50ch08:55206372..55206711	340	-	n/a
exon	exon:Solyc08g066500.2.1.2	SL2.50ch08:55211398..55211557	160	-	n/a
exon	exon:Solyc08g066500.2.1.3	SL2.50ch08:55211192..55211295	104	-	1
exon	exon:Solyc08g066500.2.1.4	SL2.50ch08:55211004..55211094	91	-	n/a
exon	exon:Solyc08g066500.2.1.5	SL2.50ch08:55210660..55210755	96	-	n/a
exon	exon:Solyc08g066500.2.1.6	SL2.50ch08:55210457..55210570	114	-	n/a
exon	exon:Solyc08g066500.2.1.7	SL2.50ch08:55210288..55210371	84	-	n/a
exon	exon:Solyc08g066500.2.1.8	SL2.50ch08:55209989..55210144	156	-	n/a
exon	exon:Solyc08g066500.2.1.9	SL2.50ch08:55209836..55209910	75	-	n/a
intron	intron:Solyc08g066500.2.1.10	SL2.50ch08:55209708..55209835	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.11	SL2.50ch08:55209517..55209600	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.12	SL2.50ch08:55208662..55209323	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.13	SL2.50ch08:55208352..55208475	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.14	SL2.50ch08:55208034..55208270	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.15	SL2.50ch08:55207821..55207898	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.16	SL2.50ch08:55207333..55207494	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.17	SL2.50ch08:55207082..55207226	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.18	SL2.50ch08:55206712..55206931	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.2	SL2.50ch08:55211558..55211666	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.3	SL2.50ch08:55211296..55211397	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.4	SL2.50ch08:55211095..55211191	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.5	SL2.50ch08:55210756..55211003	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.6	SL2.50ch08:55210571..55210659	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.7	SL2.50ch08:55210372..55210456	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.8	SL2.50ch08:55210145..55210287	n/a	-	n/a
intron	intron:Solyc08g066500.2.1.9	SL2.50ch08:55209911..55209988	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc08g066500

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17904044%2Fdetails feature 17904044

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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