Solanum lycopersicum mRNA Solyc08g066500.2.1
 mRNA details
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| Name | Type |
Length
2,725
|
Organism |
|
Description
Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA
|
|
Location(s)
SL2.50ch08:55206372..55211887
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| Ontology term(s) |
|
GFF source
ITAG_eugene
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- Interpro2go term
- GO:0006355
- GO:0045449
- Length
- 5516
- Nb exon
- 18
- Sifter term
- GO:0003700
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc08g066500.2.1 Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA
CTTGAAGTGATGATGGCTGTGACATCAAGCTGTAAAGACAAATTTGGGATGGATAGTGGTAAATATGTGAGGTACACTCCTGAGCAGGTAGAGGCTTTGGAGAGGTTGTATCATGAATGTCCAAAGCCTAGTTCACTCCGTCGCCAGCAGTTGATTCGGGAGTGTCCAATTCTGTCGAATATCGAGCCAAAACAGATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAACGTAAAGAATCATCGCGCCTTCAAGGCGTGAACAGAAAATTGACTGCAATGAATAAGCTGTTGATGGAAGAGAACGATAGGTTGCAGAAGCAAGTTTCACAGTTGGTGTATGAGAATAGCTTTTTCCGCCAACAGACTCAAACTGCAGCCTTAGCCACCACAGACAACAATAGTTGTGAATCTGTGGTGACGAGTGGTCAACACAACTTGACCCCTCAGCGTCCACCAAGGGATGCAAGCCCTGCGGGACTTTTGTCCTTAGCAGAGGAAACTTTAACAGAGTTTTTATCAAAGGCAACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCAATTTCTCATGGTTGCTCAGGAGTAGCCTCGCGTGCTTGTGGCCTTGTGGGTCTAGAGCCTACAAGAGTTGCTGAAATTCTTAAAGATCGGCCATCATGGTTTCGTGACTGCCGAGCAGTGGATGTTCTCAATGTGATGTCCACTGGAAACGGTGGAACCATTGAATTGCTATACATGCAGCTCTATGCACCTACTACACTGGCACCAGCTCGTGACTTTTGGTTAATGCGGTATACATCTGTTATGGAAGATGGTAGCCTTGTGATATGTGAAAGATCCCTGAACAACACTCAGAATGGTCCTAGTATGCCACCGGTGCAGAGTTTTGTGAGAGCAGATATACTGCCGAGTGGATATCTGATACGACCCTGTGAAGGAGGTGGTTCAATCATTCACATAGTTGACCATATGGATTTAGAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCACTGTATGAGTCATCAACATTGTTGTCGCAGAGGACAACTATGGCGGCATTACGTCACTTGAGACAAATTTCTCAAGAAATTTCACATCCTACTGTCTCTGGCTGGGGAAGAAGACCTGCTGCGTTGCGCGCACTTGGTCAAAGATTGAGCAAGGGTTTTAACGAGGCCGTTAACGGTTTTACTGATGAGGGATGGTCTATGCTTGAAAGTGATGGCGTAGATGATGTTACTATTCTTGTGAACTCATCACCCAGCAAATTGATGGGTGCAAACATCTCTTATGCCAATGGATTTCCATCGATGAGCAGCGCTGTGCTTTGTGCCAAGGCTTCTATGCTTTTACAGAACGTACCTCCACCCATTCTGCTAAGGTTCTTGCGGGAACACCGATCAGAATGGGCAGACAGTGGTATCGATGCTTATTCAGCTGCTGCAGTTAAAGCTGGTCCATGCAGCATACCAGTCACCCGAACTGGAAGTTTTGGTGGACAAATTATTCTTCCACTGGCTCACACAATTGAACATGAAGAGTTTATGGAGGTGATAAGACTTGAAAGCATTGGCCACTATCAAGATGACATGATAATGCCTAGTGACATCTTCCTTCTGCAACTTTGTAATGGAGTGGACGAGAATGCTATTGGAACATGTGCAGAGCTCATGTTTGCTCCTATTGATGCCTCATTTGCTGATGATGCTCCTCTCCTTCCCTCTGGTTTTCGTATCATTCCTCTGGATTCCAAGGCGGATGCATCTAGTCCAAACCGCACACTTGATCTTGCATCAACTCTTGAGGTTGGACCAGCTGGAAGTCGACCAACTGGGGATCATTCCAAGAATTCTGGTAGCGCAAAATCGGTTATGACAATAGCATTTCAATTTGCATTTGAGATTCATCTTCAAGAAAGCATAGCTGCTATGGCACGTCAATATGTCCGCAGTATCATATCATCTGTTCAGAGGGTTGCTTTGGCTCTCTCTCCATCTCGTATTGGTTCTCTCCCTGGTCTAAGATCTCCACCTGGCACACCTGAAGCCCAGACTCTTGCCCGTTGGATTTGCCAAAGTTATAGATTCTTCTTAGGCGTGGAGCTGCTCAAATCTGCTAGCGGAGGAAGTGAATCCATCCTGAAAGAAATTTGGGATCACTCAGATGCTCTGATGTGTTGCTCTATGAAGGCACTGCCAGTTTTCACATTCGCGAATGAGGCTGGACTTGACATGCTAGAAACCACCTTAGTAGCCCTTCAAGATATTAGTCTGGAAAAGATTTTCGATGACAATGGAAGAAAGGCTCTCTACTCTGAGCTTCCACAGATAATGCAGCAGGGTTTTGCATGTCTTCAAGGTGGTATCTGTTTGTCAAGTATGGGAAGGCCAATATCCTATGAGAGAGCAGTAGCTTGGAAAGTATTGAATGAAGAAGAAGATGCCCATTGTATATGTTTTATGTTTATCAATTGGTCTTTTGTCTGATATTATTTTGCACATCAATGTAGGAACTCATTAATGCAAACTTAGATCAACAACACTTCTTTTCTTTTTGAATCATACTTCATGGATCAACCTCCTTCCATTTTTTTACTTTCTTTTAATTATCTTTGGTTTTTAACTTACTCTTACTAGAAGCAATCTCACATTACATTTAGCTCACACATTCAGTGGGTTA
CTTGAAGTGATGATGGCTGTGACATCAAGCTGTAAAGACAAATTTGGGATGGATAGTGGTAAATATGTGAGGTACACTCCTGAGCAGGTAGAGGCTTTGGAGAGGTTGTATCATGAATGTCCAAAGCCTAGTTCACTCCGTCGCCAGCAGTTGATTCGGGAGTGTCCAATTCTGTCGAATATCGAGCCAAAACAGATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAACGTAAAGAATCATCGCGCCTTCAAGGCGTGAACAGAAAATTGACTGCAATGAATAAGCTGTTGATGGAAGAGAACGATAGGTTGCAGAAGCAAGTTTCACAGTTGGTGTATGAGAATAGCTTTTTCCGCCAACAGACTCAAACTGCAGCCTTAGCCACCACAGACAACAATAGTTGTGAATCTGTGGTGACGAGTGGTCAACACAACTTGACCCCTCAGCGTCCACCAAGGGATGCAAGCCCTGCGGGACTTTTGTCCTTAGCAGAGGAAACTTTAACAGAGTTTTTATCAAAGGCAACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCAATTTCTCATGGTTGCTCAGGAGTAGCCTCGCGTGCTTGTGGCCTTGTGGGTCTAGAGCCTACAAGAGTTGCTGAAATTCTTAAAGATCGGCCATCATGGTTTCGTGACTGCCGAGCAGTGGATGTTCTCAATGTGATGTCCACTGGAAACGGTGGAACCATTGAATTGCTATACATGCAGCTCTATGCACCTACTACACTGGCACCAGCTCGTGACTTTTGGTTAATGCGGTATACATCTGTTATGGAAGATGGTAGCCTTGTGATATGTGAAAGATCCCTGAACAACACTCAGAATGGTCCTAGTATGCCACCGGTGCAGAGTTTTGTGAGAGCAGATATACTGCCGAGTGGATATCTGATACGACCCTGTGAAGGAGGTGGTTCAATCATTCACATAGTTGACCATATGGATTTAGAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCACTGTATGAGTCATCAACATTGTTGTCGCAGAGGACAACTATGGCGGCATTACGTCACTTGAGACAAATTTCTCAAGAAATTTCACATCCTACTGTCTCTGGCTGGGGAAGAAGACCTGCTGCGTTGCGCGCACTTGGTCAAAGATTGAGCAAGGGTTTTAACGAGGCCGTTAACGGTTTTACTGATGAGGGATGGTCTATGCTTGAAAGTGATGGCGTAGATGATGTTACTATTCTTGTGAACTCATCACCCAGCAAATTGATGGGTGCAAACATCTCTTATGCCAATGGATTTCCATCGATGAGCAGCGCTGTGCTTTGTGCCAAGGCTTCTATGCTTTTACAGAACGTACCTCCACCCATTCTGCTAAGGTTCTTGCGGGAACACCGATCAGAATGGGCAGACAGTGGTATCGATGCTTATTCAGCTGCTGCAGTTAAAGCTGGTCCATGCAGCATACCAGTCACCCGAACTGGAAGTTTTGGTGGACAAATTATTCTTCCACTGGCTCACACAATTGAACATGAAGAGTTTATGGAGGTGATAAGACTTGAAAGCATTGGCCACTATCAAGATGACATGATAATGCCTAGTGACATCTTCCTTCTGCAACTTTGTAATGGAGTGGACGAGAATGCTATTGGAACATGTGCAGAGCTCATGTTTGCTCCTATTGATGCCTCATTTGCTGATGATGCTCCTCTCCTTCCCTCTGGTTTTCGTATCATTCCTCTGGATTCCAAGGCGGATGCATCTAGTCCAAACCGCACACTTGATCTTGCATCAACTCTTGAGGTTGGACCAGCTGGAAGTCGACCAACTGGGGATCATTCCAAGAATTCTGGTAGCGCAAAATCGGTTATGACAATAGCATTTCAATTTGCATTTGAGATTCATCTTCAAGAAAGCATAGCTGCTATGGCACGTCAATATGTCCGCAGTATCATATCATCTGTTCAGAGGGTTGCTTTGGCTCTCTCTCCATCTCGTATTGGTTCTCTCCCTGGTCTAAGATCTCCACCTGGCACACCTGAAGCCCAGACTCTTGCCCGTTGGATTTGCCAAAGTTATAGATTCTTCTTAGGCGTGGAGCTGCTCAAATCTGCTAGCGGAGGAAGTGAATCCATCCTGAAAGAAATTTGGGATCACTCAGATGCTCTGATGTGTTGCTCTATGAAGGCACTGCCAGTTTTCACATTCGCGAATGAGGCTGGACTTGACATGCTAGAAACCACCTTAGTAGCCCTTCAAGATATTAGTCTGGAAAAGATTTTCGATGACAATGGAAGAAAGGCTCTCTACTCTGAGCTTCCACAGATAATGCAGCAGGGTTTTGCATGTCTTCAAGGTGGTATCTGTTTGTCAAGTATGGGAAGGCCAATATCCTATGAGAGAGCAGTAGCTTGGAAAGTATTGAATGAAGAAGAAGATGCCCATTGTATATGTTTTATGTTTATCAATTGGTCTTTTGTCTGATATTATTTTGCACATCAATGTAGGAACTCATTAATGCAAACTTAGATCAACAACACTTCTTTTCTTTTTGAATCATACTTCATGGATCAACCTCCTTCCATTTTTTTACTTTCTTTTAATTATCTTTGGTTTTTAACTTACTCTTACTAGAAGCAATCTCACATTACATTTAGCTCACACATTCAGTGGGTTA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc08g066500.2.1 | SL2.50ch08:55206564..55211839 | 828 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc08g066500.2 | SL2.50ch08:55206372..55211887 | 5,516 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc08g066500.2.1.1 | SL2.50ch08:55211667..55211887 | 221 | - | 1 |
| exon | exon:Solyc08g066500.2.1.10 | SL2.50ch08:55209601..55209707 | 107 | - | 1 |
| exon | exon:Solyc08g066500.2.1.11 | SL2.50ch08:55209324..55209516 | 193 | - | n/a |
| exon | exon:Solyc08g066500.2.1.12 | SL2.50ch08:55208476..55208661 | 186 | - | n/a |
| exon | exon:Solyc08g066500.2.1.13 | SL2.50ch08:55208271..55208351 | 81 | - | n/a |
| exon | exon:Solyc08g066500.2.1.14 | SL2.50ch08:55207899..55208033 | 135 | - | n/a |
| exon | exon:Solyc08g066500.2.1.15 | SL2.50ch08:55207495..55207820 | 326 | - | 1 |
| exon | exon:Solyc08g066500.2.1.16 | SL2.50ch08:55207227..55207332 | 106 | - | n/a |
| exon | exon:Solyc08g066500.2.1.17 | SL2.50ch08:55206932..55207081 | 150 | - | n/a |
| exon | exon:Solyc08g066500.2.1.18 | SL2.50ch08:55206372..55206711 | 340 | - | n/a |
| exon | exon:Solyc08g066500.2.1.2 | SL2.50ch08:55211398..55211557 | 160 | - | n/a |
| exon | exon:Solyc08g066500.2.1.3 | SL2.50ch08:55211192..55211295 | 104 | - | 1 |
| exon | exon:Solyc08g066500.2.1.4 | SL2.50ch08:55211004..55211094 | 91 | - | n/a |
| exon | exon:Solyc08g066500.2.1.5 | SL2.50ch08:55210660..55210755 | 96 | - | n/a |
| exon | exon:Solyc08g066500.2.1.6 | SL2.50ch08:55210457..55210570 | 114 | - | n/a |
| exon | exon:Solyc08g066500.2.1.7 | SL2.50ch08:55210288..55210371 | 84 | - | n/a |
| exon | exon:Solyc08g066500.2.1.8 | SL2.50ch08:55209989..55210144 | 156 | - | n/a |
| exon | exon:Solyc08g066500.2.1.9 | SL2.50ch08:55209836..55209910 | 75 | - | n/a |
| intron | intron:Solyc08g066500.2.1.10 | SL2.50ch08:55209708..55209835 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.11 | SL2.50ch08:55209517..55209600 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.12 | SL2.50ch08:55208662..55209323 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.13 | SL2.50ch08:55208352..55208475 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.14 | SL2.50ch08:55208034..55208270 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.15 | SL2.50ch08:55207821..55207898 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.16 | SL2.50ch08:55207333..55207494 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.17 | SL2.50ch08:55207082..55207226 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.18 | SL2.50ch08:55206712..55206931 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.2 | SL2.50ch08:55211558..55211666 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.3 | SL2.50ch08:55211296..55211397 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.4 | SL2.50ch08:55211095..55211191 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.5 | SL2.50ch08:55210756..55211003 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.6 | SL2.50ch08:55210571..55210659 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.7 | SL2.50ch08:55210372..55210456 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.8 | SL2.50ch08:55210145..55210287 | n/a | - | n/a |
| intron | intron:Solyc08g066500.2.1.9 | SL2.50ch08:55209911..55209988 | n/a | - | n/a |
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