Clone hba-80c13

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Clone
Clone name
hba-80c13
LE_HBa0080C13
C00HBa0080C13
P080C13
Clone type
BAC
Contamination
none
Estimated length
92,621
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2853 : [coherent], 1 members:
C00HBa0080C13
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
HeroTomato-EXPEN 2000plate 13G1
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome unmapped
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

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Sequencing Project
Chromosome unmapped
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
125,982 bp
C00HBa0080C13.2
CU929469.3 (GenBank) 		[View]
End Sequences
Warnings
none
FTP
Unmapped Clones Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1511, 1772, 1772, 2089, 2474, 2818, 2818, 2942, 3106, 3191, 3291, 3696, 3696, 4040, 4428, 4428, 5226, 5708, 6358, 6358, 6805, 14094
HindIII in silico (33)
1176, 1208, 1233, 1342, 1500, 1552, 1719, 1747, 1756, 1786, 1976, 2074, 2476, 2804, 2822, 2828, 2960, 3085, 3183, 3337, 3726, 3786, 4093, 4384, 4466, 4915, 5329, 6069, 6227, 6238, 6320, 6828, 13796
Fragment Lengths Match Score
0.81
Annotations  
Browse
LE_HBa0080C13 has no browsable sequence annotations
Download
temporarily unavailable
User comments [Add comment] 
Posted by Helen Beasley (sequencer) on 2009-02-20 07:27:18   
Moved to unmapped - pending chr4 confirmation at Imperial College.
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End Sequences

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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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