Clone Read LE_HBa0080C13_SP6_20472

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080C13_SP6_20472
Primer
SP6
ID from Seq. Facility
LE_HBa_080_C13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
688 trimmed for vector and quality, 812 raw
Genbank Accession
DU037553
Sequence
>LE_HBa0080C13_SP6_20472 (raw untrimmed)
TTTTTCCCTTTTTTCTATGGCTACCTACGAGCCTATCAATGTATCATCAATGAATACAATGACAAAGAGATCTACATATGGCTTAAAGATTCCGTTCATC
AAGCTCATGAACGCGGCAAGGGCATTCGTAAGCCCAAAAGACATTATTAAGAACTCATAATGCCCATACCTGGTCCAAAAAGCGGTCTTGGGCACATCCG
TTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAATCGATCTTTGAGAAGGTGCAAGCACCTTGTAACTGATCGAACAAATCATCGATGCGAGGAAG
AGGATACTTGTTCTTAACTGTTACCTTATTTAGTTGTCTGTAGTCAATGCACATCCGAAAACTTCCATCCTTCTTCTTCACAAAAAGTACAGGAGCACCC
CAAGGGGATGCACTTGGTCTAATAAAGCCTTTGCTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCAGCGGGAGCCATCCTATAAGGGGGTA
TGGAAAGGGGACGACTACCCGGCTCCAGATCAATGCAAAAGTCGATATCCCTATTCGGTGGCATACCAGGAAGGTCTGCGGGAAACACATCCAGAAACTC
ACGGACTATTGGAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAAACAACCCTTACTAACAATTTTCTTAGC
ACGAAGAAAGGAGATGATACGAACTGGATTGGAAGTGTAGTAACCCTCCCCCACTAACGGATCTGTCCCAGGCTTGGCTAAACGTCACAGTTTTCCCATT
ATAAACCAAGAT
>LE_HBa0080C13_SP6_20472 (trimmed for quality and cloning vector)
TCATCAATGAATACAATGACAAAGAGATCTACATATGGCTTAAAGATTCCGTTCATCAAGCTCATGAACGCGGCAAGGGCATTCGTAAGCCCAAAAGACA
TTATTAAGAACTCATAATGCCCATACCTGGTCCAAAAAGCGGTCTTGGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAATCGAT
CTTTGAGAAGGTGCAAGCACCTTGTAACTGATCGAACAAATCATCGATGCGAGGAAGAGGATACTTGTTCTTAACTGTTACCTTATTTAGTTGTCTGTAG
TCAATGCACATCCGAAAACTTCCATCCTTCTTCTTCACAAAAAGTACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATAAAGCCTTTGCTTAACAACT
CTTGAAGTTGGGCCTTTAACTCTCTTAACTCAGCGGGAGCCATCCTATAAGGGGGTATGGAAAGGGGACGACTACCCGGCTCCAGATCAATGCAAAAGTC
GATATCCCTATTCGGTGGCATACCAGGAAGGTCTGCGGGAAACACATCCAGAAACTCACGGACTATTGGAACCGACTCAATTGAAGGTACTTGGGTAGTA
TCATCCCTGAGATGTGCCAAGAACGCTAAAACAACCCTTACTAACAATTTTCTTAGCACGAAGAAAGGAGATGATACGAACTGGATTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.982975
Expected error %
0.236244
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 341 E Value 1e-94 Identity 82.50% Align. Length 681bp (98.98%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 336 E Value 7e-94 Identity 78.60% Align. Length 681bp (98.98%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080C13
Clone
Clone name
hba-80c13
LE_HBa0080C13
C00HBa0080C13
P080C13
Clone type
BAC
Contamination
none
Estimated length
92,621
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found