Clone Read LE_HBa0141L24_SP6_100030

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0141L24_SP6_100030
Primer
SP6
ID from Seq. Facility
LE_HBa_141_L24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
29 trimmed for vector and quality, 856 raw
Sequence
>LE_HBa0141L24_SP6_100030 (raw untrimmed)
CAAAGCCTTGGTCTTGCAGTTATGTTATCCCGCTGTGTTTGTCCGCGTACCATGCACTTTGTGTTGCTTCTCCCATTGCGACTTTGACCAACTAAATTGC
ATAACCAAATATCAAAATTAGCCTTATATTTTGTTCCACCTTGCCTGACCTTTGTAAGAACATCCTGTCTTACTTCTTTGACTTGAATTTAATCAAACTT
CGGTACGTACCATCTGCAGTTCTTTATGTATCCATAAAAGTAGTATCTATAGCTATTACAAGCAATGGATGATATCCCCTCTAATATAAATGAACTGACA
CTTAAGCATGTTCAGCTACCGATGGTGTTTTTGTTGTTTGAGGGAAGCATGGTATTACAGTGATTCAGAAACCTTGTCTGTTCTTTGCATTCTTTTAGCA
TGATGTCATATGTCTTTCAGTGCAACAGCTAGTACACCCTCCCAAACTTGTTGGCGTCTGTCTCGATGAATCCTCTATGTCCCCTCCCCTCCCCACTGCT
TCAACCTATTTTACCCTGGTGTGATGTTTCTGTTGATAAACGGTGAACTCTCGATACAATAAATTTCACTTTTTTTTCATAATGAGTGGTGTTTTTTTAT
TCAGATGGTCTTCCTTTCTAGTTCAGAGCCCTTGAGCTTGTTTT
GGAGCTAACTTGCTTGTCTCTTGATGCTCAGGTATGCAAAAGACTCTTTTGGTGGC
AGATTGATAACTCTTTTGTGTAATAGACTAGAATATTTGCTGTCCATTGGAAGGATAATATACTAGCCTCAAAATGGGTGCCATTATTGCATAATGTGAA
AAATATCTTAAGTCTATTATTCAATTAAGTGTGTTGAAGAACATGATGTCTTCAGT
>LE_HBa0141L24_SP6_100030 (trimmed for quality and cloning vector)
GGAGCTAACTTGCTTGTCTCTTGATGCTC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.860162
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0141L24
Clone
Clone name
hba-141l24
LE_HBa0141L24
P141L24
Clone type
BAC
Contamination
none
Estimated length
68,870
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found