Clone Read LE_HBa0158P24_SP6_103294

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158P24_SP6_103294
Primer
SP6
ID from Seq. Facility
LE_HBa_158_P24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
216 trimmed for vector and quality, 783 raw
Sequence
>LE_HBa0158P24_SP6_103294 (raw untrimmed)
ACCTTTTCTTCCATCCCTCTACACATCAATCTTTTNCCAATAACTTATTAATCGATTATAATTTTACACTCAAATGCATCTTCAAATTTATTTACATCAG
TTTTATAGAGATAACACGTACATATTTTTATAAATATGTATTTCATAGTTCAAAACCCACATGGCACGAAAAGGAAATCCTATTTTGGTAAGACTTGATA
TATCCCAATAGCTTAGAAAACACGGGTTATGCATGGGTTTATTTGAAATCATTGTTAATACATGCAATTACTTCAATACAGACATAAAAATTCATAAAAC
AATAAATTGAATCATTATTGAAAGGAACCTATGACCTTAAAGAAGAACCCGAACGTCAATTGGAAATTCTACTTTTACAAAATTGGATGAATCTAATTAC
CCGATGAATAAAAGTACGCCATATGTGAATCACATCGCTCCGTGATGCCCAACTCATGTAGAAATGCATGAATGGGAGGCTTGAACTTCCATCTCTTATC
TCTGTTCATGGTAAATACTTTTCATGATGTACTAATCCGTCCCTAATAATTACACGTCATTGAATACAATCTACCCATTCGTTGCTAATCTCTACTGTGA
CGCCATTGATGTGCTTTAGATCTCTGTAGTTCTGCATTTTCTCTCTTTTCTCCTCGTCGTCTCCTTCTCTCTTTCTTATCTTCTTCTTTTCTATCTTTAC
ATTCTTACTCTTCTCTACTTGATTTTAATCCTTATTAATTAAGCTGATTGTTCATTACACTATAGTAGTATTATGAATAAAAC
>LE_HBa0158P24_SP6_103294 (trimmed for quality and cloning vector)
TCTTCAAATTTATTTACATCAGTTTTATAGAGATAACACGTACATATTTTTATAAATATGTATTTCATAGTTCAAAACCCACATGGCACGAAAAGGAAAT
CCTATTTTGGTAAGACTTGATATATCCCAATAGCTTAGAAAACACGGGTTATGCATGGGTTTATTTGAAATCATTGTTAATACATGCAATTACTTCAATA
CAGACATAAAAATTCA

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.883649
Expected error %
0.978969
Sequence Annotations 
Automatic Annotations
Arabidopsis thaliana Mitochondria (screening/organelle/ATH1_mitochondria)NCBI BLAST
mitochondria Score 66 E Value 1e-12 Identity 97.30% Align. Length 36bp (16.67%) Frame 3
No sequence description found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158P24
Clone
Clone name
hba-158p24
LE_HBa0158P24
P158P24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found