Clone Read LE_HBa0189P05_SP6_107096

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189P05_SP6_107096
Primer
SP6
ID from Seq. Facility
LE_HBa_189_P05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 935 raw
Sequence
>LE_HBa0189P05_SP6_107096 (raw untrimmed)
CAAGCGGAGGGAAATATCTTCTTGTCAGGACCTGCGATCTGATTCTATATGGGTGACTCGGTTGCNTACTTCTTATCCAATGAAGAATCACACCCTCTAC
CCGTTNGTAGTGATATTACTCAATTCTTTGCTTGCCGAGGTNGATNCTACTCAATGGACGGATNGGTCCTCTTTGTTTGGTTTGTCTCTTATATCGTTAC
GTACATTCCACAGCGCCACTTAGACGTTTCGTCAGATATAAGTCGCTGAGATTGAACAGTCTGGCTACGACTGTACTTTACCTCGCTATCTGTACATTGC
CAGATCCACCTATTAGTTTATTCCCTGTTCTGGTTCAACTTTGGCATTCCGCTTTGTTGATACTAATACGGTCAGGATATTGTTACACACTGGGATCGTA
TTTGACGGTCGCCTTCAAGGGTCTCGGGTCCAGGGATCTGGCTGGGCGCGCACATGGACATAACTGTTTTTCTTTCCCCCTCCCCCCCCAGAGGTGCTCC
TGATCTCAAAGA
AAAAAAAGGGGAGCGCTGCGTATCCCATCCTTTCCGATTTTAACACTCTGTCTATCATATCATTAGTCGGCCACAATATTTATCAGTT
GCATGTTCATTCGTTACTAATCTCTCTCCACTCCCCCCGTCTTACGCTTCTGTGCTGCATGCTCCCTCGTATCCTCCTTGCTCATGTACCACTGCGACTC
TATCACATCCTCGCTTTTCGCTTCTCTTCTTCTCTCCTCCCTCTACCTCCACTTCACCCCGCCTCCCTTCCACAAGCGTATCAACCTCNCTCATACACCC
TACCGCCCTACGCTCTCACACCACCCGATCTAACCTCCCACTCTATTTATCTAATTCTGCCTATTACCTCTCTTACAGCGTCTCATTTCTCTGCACACTG
ACACTTACTTAGTCACTCTTCGGATCAGCACACCT
>LE_HBa0189P05_SP6_107096 (trimmed for quality and cloning vector)
AAAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.45557
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189P05
Clone
Clone name
hba-189p5
LE_HBa0189P05
C02HBa0189P05
P189P05
Clone type
BAC
Contamination
none
Estimated length
47,743
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found