Clone Read LE_HBa0190E18_SP6_107362

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190E18_SP6_107362
Primer
SP6
ID from Seq. Facility
LE_HBa_190_E18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 840 raw
Sequence
>LE_HBa0190E18_SP6_107362 (raw untrimmed)
GTACTTCGCGTCTTTTCCTTTATTGGGGGATGGTGGCTTGCTGAGTCAAGGAGTGTTGTGTATGCCAACCTTTGAAGACTTCATCAACCAAACTTTTGTA
GAAGTCGACCCCTTTCCAGAATCTCTTTATATCAGAATGAGATATGGGTCTAGGAGAACTTTAAACTGCTTCTAGGTGGTGGAGCTCCACTCGGATTCTA
TCAGAAGTCACTGCGTAGGGCCAAAAATG
CCACACGACTCAAATCCAAGCACCAACATCCAAGTGGTCGAGTTCAACACCTCATCGTTCTCACTTGGAAG
AGGGATCATCGATGTGTCGGAGCTTCGAGCGTCGTATGACTCTGGACTCAATACAATGTGACTGTAGATGCCTATAATTGAATAGGTTGACCTGATGCAC
GAATATACTCCTCTCGAGATCATTGGCTGTGGCGAGGATTATGCTCAGATATTAGTCGATGACATTGAGTGTCACCGCAATTTTCCGGTATCAAACATAT
TGCCTATGGGAGCTCACATTCCTTCATATGTCTTCGGAGTGATACCATATATGATTTGAGTCCTCGGCGAAACTACACCCCCCTGTAACTGGCCCAGGGA
TTGGTCAGTCCATGGAACAAGATACTACCTCTAGGATTTCCTCATATTTTGTTTGATTTACTTCAAGGGCATTTGAGTTATCACACTCTTCTTTGGTATG
AATATTCATTTATATATACTCTCCGTTCATCCTTAGCTTTGGTCACTTTTTTTGCCCAGGAATTTTGGAAGAATTAGCTCTTCCTTTTTGTACCTTCTTA
GGGGGCCATTCTCTTTTGTTCAAAAAGGTCCGCAGGCTGA
>LE_HBa0190E18_SP6_107362 (trimmed for quality and cloning vector)
CCACAC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.39773
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190E18
Clone
Clone name
hba-190e18
LE_HBa0190E18
P190E18
Clone type
BAC
Contamination
none
Estimated length
83,869
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found