Clone Read LE_HBa0190E18_T7_107363

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190E18_T7_107363
Primer
T7
ID from Seq. Facility
LE_HBa_190_E18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 1733 raw
Sequence
>LE_HBa0190E18_T7_107363 (raw untrimmed)
GAGTGATGCTACAGACTACCTGGCGTGTCACATCACGCGCGGTGGGTGATATCCCATGCGGTANTGNAAGAGTTCAGCAACTCNATAGGTCACGCGGTCT
NATCGTCGAGATGTCCGTCTTATGNTGGGAGATCGGTGATACAACAACAGTAGTACGCACACCCCTCTTGATGACAGTCGCGTGTTGATAGCATATGCAG
TACACNTNATTNCAATTNCTATTGTTTNTNCNAAGNGATGCTACACGCCGCTATGNAGTATTGATAGTGTAGATAATACTNANTGATAGTCCAAGGATGA
TACAATGCCTAATGATAAGATCTATACTCAGTGAGCTACCACATGTACCCTTACTATGTATAGTTTATAGNGCATTCAGACTAGTACACACTACTTCCCC
TACACACTAGGTACAACANTAAGATCAGATGTATTACTCATGACGAGCGACTATGTATGTACATCACTAGTATGCGTGCTTCACAGTATTCACAATATGC
GAACATACGTTCGCTCATTATCAAGTGTCTATCCAGAACGACTCATTTCATCTCCCACTATCCTCTCACGCACACAAGTAGTACGATCGAGATACAATAA
AGTACATGAGCTCTTCATGAACCGGCGCGCGTGGTTCATTCTAGACCGCACAAAGTAATGCNATACANGNCTTCTNGAANTNACACTTTCTATAAGTACT
TAAATAAGATACGCATATCACGTNTNACTCGTATGTAACCTNGTGTGNACCTCTGCNCNTNANGCTNTNCNAGTNANACTAGTGGTATGAGCTATTAGTA
ACGTTTTTNGNCGTGAGNCGCATNGATTGCACTCTGCAGCTACTGAAACAGATATTAACTTAGCGTAGTTTACCACCNGCATTTGTGTATAAAACTACGC
AGTGCTCTATACACTGCAAGAGTCAGTGGACGGATTAGCACATGATCAAGTGTTAGTAACATATATTGACTATACTATTTGCCAATCGACAGTCATACGT
GCATCTATGCATGTTCGCGCACACTAGCACCATGTACATTGTGTATCGCGAATGACAGTATCCATATGAGTCGAGGCTACTCAATTAGTTGAGTACTCGT
GACGTTGTTAGCNCTCAGCTAACATATAGAANGATGCTTATATTGACCATGTTTCTTTATATGTACCGCATTCATAGTAGAACTATGATACACAATAGTG
GTCTACTTATGTGGAGTACTATGATAATCTGTCTCATTGCTGATATCAGATATCTACCCTGTAATAGAGATATGCTGCTCCCTAATATCTCTGCATATCT
GNTNGTCGTGCATAAGATAAAGACATAGTACATGCGACGGCTTACCAACATTCAATACATTNACTACCGCGATACTCCCCTCCTCCACGTGGTGCTCATT
TNTCTACATAAATTGAGACATCTAGGTTACATATAATCACTACTTCATATTGTCATCATACTACAACTCTTCAGAGCATACCTCTTTATGTAGACGCTGT
ANCCCCTATACTTGATTTACATCGATGATGCTGTCACNATNCTCGATCATTTATGTGATTNATTGATCCCACATATACCTTAGCGTATTATCCTGTGCAC
CTCTANATATANATNATGACTATTTGCTATANATCAACAGCNATGCACATGTNCTCTGACTACCACATCATATTCTCTTCCCTCTGCACGTGTTTNCTNC
TCTGCATNCNCACTCTACGCTGCGCTGGCATCA
>LE_HBa0190E18_T7_107363 (trimmed for quality and cloning vector)
TTGATAGTG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.453092
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190E18
Clone
Clone name
hba-190e18
LE_HBa0190E18
P190E18
Clone type
BAC
Contamination
none
Estimated length
83,869
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found