Clone Read LE_HBa0193J06_SP6_109111

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193J06_SP6_109111
Primer
SP6
ID from Seq. Facility
LE_HBa_193_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
700 trimmed for vector and quality, 1016 raw
Genbank Accession
DU094336
Sequence
>LE_HBa0193J06_SP6_109111 (raw untrimmed)
GGCCGGGATTCCCGACAGTTTTAAGCTCAGCTTCTGTAGTAGATAGAGCAACACATTTTTGCAACCTAGATTGCCCGTCACAGCTCCCCCTGCAAAAGTA
ACCAAGTACCCTGAACTTTACTTGCGAGTATCAACATCACCAGCCATGTCTGAATCAATATAACCACAAAGAATAGGCTTCCCTGTACCAAAACACAAAC
TCAGACTAGAAGTGCCACAGAGATATCTCATAACCCACTTCACAGCATTCCAATGTTCTCTTCCCGGATTAGAAAAAAACGGCTAACAACTCCAACAGCG
TGAGCAATATCCGGTCTTGTACAAACCATCGCATACATCAAACTACCAACAGCTGAAGCATAAGGAACTTTCTTCATATCTTCCTTCTCATCATCACTAG
AAGGACACTGTTTCGTGCTCAATTTGAAGTGCATAGCTAAAGGTGTACTGACAACCTTAGCTTTGTCCATGCTGAATCTGCGAAGTACTTTCTGAATGTA
CTTCTCTTGTGATAATACCAATTTCTTGGCCTTCCTATCATGGACAATCTGCATGCCATGAATCTGCCTTGCTGGTCCTAAGTCTTTCATAGCAAAATAC
TTACTCAACTCTTTCTTCAACTTCTGAATCCTGCAAGTATTATGACCAACAACAAGCATGTCATCAACATAAAGCAACACATAATAAAGTCACCATCAGA
GAGCTTTTGCACAAAAACACTTATGGTCTGAAGAAATCTTCTTGAACACTGTTGACTCATAAAAGAACCAACTTCCGGTACCCTGCCCAGAGCCTGTTTC
AACCCATCAAGCCCTTCTTATTTTGCAAACTAATTCTCTTTCCCTTGACTCAAAACTTCCGGGTGGTCCATAAAAATTCTTCACTTAATTCACCTGGAGG
AAAGCTGTTTTAAAGTCAATTGCTCATCTCTAAATTATATTTGAGCAATCTAATACGACCAAGGATAGAACCTTCTAGGTGAAAAAAATCTTCAAATAAT
TCCCCTTTGGATAAAC
>LE_HBa0193J06_SP6_109111 (trimmed for quality and cloning vector)
CTTCTGTAGTAGATAGAGCAACACATTTTTGCAACCTAGATTGCCCGTCACAGCTCCCCCTGCAAAAGTAACCAAGTACCCTGAACTTTACTTGCGAGTA
TCAACATCACCAGCCATGTCTGAATCAATATAACCACAAAGAATAGGCTTCCCTGTACCAAAACACAAACTCAGACTAGAAGTGCCACAGAGATATCTCA
TAACCCACTTCACAGCATTCCAATGTTCTCTTCCCGGATTAGAAAAAAACGGCTAACAACTCCAACAGCGTGAGCAATATCCGGTCTTGTACAAACCATC
GCATACATCAAACTACCAACAGCTGAAGCATAAGGAACTTTCTTCATATCTTCCTTCTCATCATCACTAGAAGGACACTGTTTCGTGCTCAATTTGAAGT
GCATAGCTAAAGGTGTACTGACAACCTTAGCTTTGTCCATGCTGAATCTGCGAAGTACTTTCTGAATGTACTTCTCTTGTGATAATACCAATTTCTTGGC
CTTCCTATCATGGACAATCTGCATGCCATGAATCTGCCTTGCTGGTCCTAAGTCTTTCATAGCAAAATACTTACTCAACTCTTTCTTCAACTTCTGAATC
CTGCAAGTATTATGACCAACAACAAGCATGTCATCAACATAAAGCAACACATAATAAAGTCACCATCAGAGAGCTTTTGCACAAAAACACTTATGGTCTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953878
Expected error %
0.472621
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 189 E Value 6e-76 Identity 74.20% Align. Length 615bp (87.86%) Frame 3
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 188 E Value 4e-80 Identity 75.00% Align. Length 615bp (87.86%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193J06
Clone
Clone name
hba-193j6
LE_HBa0193J06
C04HBa0193J06
P193J06
Clone type
BAC
Contamination
none
Estimated length
132,618
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found