Clone Read LE_HBa0193J06_T7_109112

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0193J06_T7_109112
Primer
T7
ID from Seq. Facility
LE_HBa_193_J06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1205 raw
Sequence
>LE_HBa0193J06_T7_109112 (raw untrimmed)
GTGTGGCGCTCGGTGGAATAACTCCTACANGGTGTATATATGCGCTGCTNTCTAATAAGAGAGATNGTGCCCTCCCTCCGCAAGAGAGCTTGTCGNCGAT
CGANATCCNACTAACGCAGTATCATGAGCTATTCTGTATGCTGCAGATGAGTAATACACAGCTGTATACTCAGGAGTGGTCNGTGAGCATGAAGACATCC
ATACTGCAAGTGTGGAGCGATAACTCATATGGTGCATCTCTTAGGATTAGTGGCCTGGTCATCTACTAATTGCTCGGTNCAGGTACGCTTTAGCAAAGTG
AGGACCTTGATCAGATATGANCATGTCGCAGTTGTCTGATGCTAAAGTCGTACGTATACCNTCTCTACGACGCTACAACGTGCGATAGATTGCGAGAAAG
TATCTACTCTTGCTTGTAGTTTCTTCGCTCTGAGATAGCGTCGAGAGTCTACATCGCAACGCGTAANGTACATATGATGCCGCGATACGTATTCCGTGAT
CGGAGTACACNGCGCGGAGCAGTAGTCTACAGNGTCTCTTCCTCTCGCCGCTCNCACGTATCACATACCCTTATCTCTCGTCTCTACTGACACGGATAGA
GCATATGCCGCATGAGTGCGTGCGGCGACGTAACGACTACGTAGTACTACTGGCCATGATCCTCGCCGCACGTGTGGCTGGTCGTAACCTCTAATCACTG
TTTTTACCATGNGGATGCCATCAACTGACATTGTATTAGATGTCTTTGTAGTTCGATCGAGTACTGCATATTCGAGGTGTTCTGTGTCTTCTGTCACTGA
GCTACTCGCANTATCTCTCGCATTCTCTACTTTCTCGTGTANCTACAACTGTAGCTTCACACAGCTACGAATAGAATGCGTAACAGAGGATGAGACATTA
ATCTGTAAAGTCTCGGAGTCCATTATACTGACACAGTGCTTGGCATACACGAACATGCGGCTCATCTCTCAGATCNCTGTGCTATAGTCGTACGANTTNC
TCTTTACATCATGCGCCTTGCTGCCCGTTCTCGTCATTACTATCNTGAGATTACTAGTGATACTGNGAATTACATATCGTATCAATTAATATTCTATTAC
TGTCACAGNTTCATGATTCTCGTGTGTGATATCTTTCTTTCTCNCTCGTGTANTATTCTAGTTCTTTCTCTTATTATGTANGTAGTATATCGTACGTGCT
GATTA
>LE_HBa0193J06_T7_109112 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0193J06
Clone
Clone name
hba-193j6
LE_HBa0193J06
C04HBa0193J06
P193J06
Clone type
BAC
Contamination
none
Estimated length
132,618
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found