Clone Read LE_HBa0050L11_SP6_10916

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0050L11_SP6_10916
Primer
SP6
ID from Seq. Facility
LE_HBa_050_L11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
715 trimmed for vector and quality, 826 raw
Genbank Accession
DU029845
Sequence
>LE_HBa0050L11_SP6_10916 (raw untrimmed)
TGCCCTGAGGCGAAAACNCAACCATCTTCCGACTCAAGTGAGGATAATATTAATAGAATCCATGTATGCAAGAAGGTACACTTCAACTTTATACAACGGC
AAAGAGTACTCATAGATGCTCATACCATACTCATTGCCATGCTTCGATCGCAAAGCGACTATCGCGTGAGCACATGGTATCTTGTTCAAATCATATTCGC
TACATAAAAGTGAATTTTCCAGTAGGTATACATAGGTCGTAACACCCGCACCGAAAACGGTAAATTGATTGTGGTTCCTGTTTATATTCTCCACATACAA
AGAGTCTCCTTCAATCATTTTGTTCTTGCAATTTTTTCCGCAGCCGACACCATTTGATTACCCATTGATTTGAGGATATATGCATGTCTCTCCCTAAACA
ATTCTTCAAACCTCTTAGGAATCGAATTAAATATAGATGCCATAAGATACTTTTTTTTGTCTATCAACATAGCATTAAGTGACTCAGTGATATTTGTGGT
CATCACATCATGTCTATTTATCGTTCTTAAGGAAGAAGACTACATCGAGGCATTTGTTCTTGAATTCTACAAAATGATTGTCAAACTTCTCCAAAGAATA
AGCCTTTGCCGCATTGTAGTAAAGATAAAGGTAATCTCCAAAATGATGATTTACACAGAGATTTTCACCAAGGTTACTCATACAATATCCGTGGTGAGCA
TGATCGCAAACGTTCACAATACCGTTGGCGATACTCTTGTGTCTATCGGAGATAAAACACAAATCTGGTACATCGACCAGAATCCCCTTCAATTTCCAAA
GAAAAATATCCAAGATGCATCATTCT
>LE_HBa0050L11_SP6_10916 (trimmed for quality and cloning vector)
GACTCAAGTGAGGATAATATTAATAGAATCCATGTATGCAAGAAGGTACACTTCAACTTTATACAACGGCAAAGAGTACTCATAGATGCTCATACCATAC
TCATTGCCATGCTTCGATCGCAAAGCGACTATCGCGTGAGCACATGGTATCTTGTTCAAATCATATTCGCTACATAAAAGTGAATTTTCCAGTAGGTATA
CATAGGTCGTAACACCCGCACCGAAAACGGTAAATTGATTGTGGTTCCTGTTTATATTCTCCACATACAAAGAGTCTCCTTCAATCATTTTGTTCTTGCA
ATTTTTTCCGCAGCCGACACCATTTGATTACCCATTGATTTGAGGATATATGCATGTCTCTCCCTAAACAATTCTTCAAACCTCTTAGGAATCGAATTAA
ATATAGATGCCATAAGATACTTTTTTTTGTCTATCAACATAGCATTAAGTGACTCAGTGATATTTGTGGTCATCACATCATGTCTATTTATCGTTCTTAA
GGAAGAAGACTACATCGAGGCATTTGTTCTTGAATTCTACAAAATGATTGTCAAACTTCTCCAAAGAATAAGCCTTTGCCGCATTGTAGTAAAGATAAAG
GTAATCTCCAAAATGATGATTTACACAGAGATTTTCACCAAGGTTACTCATACAATATCCGTGGTGAGCATGATCGCAAACGTTCACAATACCGTTGGCG
ATACTCTTGTGTCTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962505
Expected error %
0.245374
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP45187.1| Score 105 E Value 7e-25 Identity 79.10% Align. Length 250bp (34.97%) Frame 2
putative transposase-related protein [Solanum bulbocastanum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP45161.1| Score 104 E Value 7e-36 Identity 79.10% Align. Length 340bp (47.55%) Frame 2
putative transposase-related protein [Solanum bulbocastanum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0050L11
Clone
Clone name
hba-50l11
LE_HBa0050L11
P050L11
Clone type
BAC
Contamination
none
Estimated length
107,022
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found