Clone Read LE_HBa0050L11_T7_10917

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0050L11_T7_10917
Primer
T7
ID from Seq. Facility
LE_HBa_050_L11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
787 trimmed for vector and quality, 854 raw
Genbank Accession
DU029846
Sequence
>LE_HBa0050L11_T7_10917 (raw untrimmed)
CCCGGGACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACTCCACTTGCGTCATAAATGACCTCAAATTTTTCTCCCCTATCTGGTTTA
ATAATAATGGGAGCAAATACTAGATTCTTCTTCAACTCTCCAAATGCTATGAGAAAATCATAATCAAAGTCAAACATACTCTTCTTTTCATAAAGTTTGC
ACAACATATGTGAAATTCTGGTTAATTCTTTAATTAATATCCCATAAAAATTTACCATGCCTAAGAGAACTTCTCAAACCTTTAATGGAGATAGGTGGGT
AAAGCATTTCTATTAACTCTACTTTAGCTCTATCAACCTTAATACCTTTTTCAGAGATCTGATGCCCCAACACTATTCCTTCTTTCACCATAAAGTGACA
CTTCTCCTAGTTTAACACCAAGTTAGAATCTTCATACCTTTTCAGTACTTTGGCCAAATTATCCAAACACTGATCAAAAGAGTCACGTACCACTGATAAA
TCATCCATGAACACCTCAATAGTTTCCTCCATCAATATAAAATCGCATAGAGAATTTGAGTCATATTTAACGTCACTTTACAGTGAGCTCTTTTCACGTT
ACAGTGACCTAGTTTCCTTTTTACAGTGAAGTTCTTCTTTTAACTCATTAACCTCCCAAGTAACCCTCTAGTGATACTTGGTGCAATCCATCACCTTAAG
GTCACAAGTAAAACCATACATACAACTTACATAAGCCAACACATACTATCATAGAAGTATAATACTTAATAGACACACTTAGGCCAAGAACATAAAAACA
TTACAGTAAGCTCTTGTCACTATGCATATATACTTATTTTTCTTCATATAGAAC
>LE_HBa0050L11_T7_10917 (trimmed for quality and cloning vector)
AGCTTTACTCCACTTGCGTCATAAATGACCTCAAATTTTTCTCCCCTATCTGGTTTAATAATAATGGGAGCAAATACTAGATTCTTCTTCAACTCTCCAA
ATGCTATGAGAAAATCATAATCAAAGTCAAACATACTCTTCTTTTCATAAAGTTTGCACAACATATGTGAAATTCTGGTTAATTCTTTAATTAATATCCC
ATAAAAATTTACCATGCCTAAGAGAACTTCTCAAACCTTTAATGGAGATAGGTGGGTAAAGCATTTCTATTAACTCTACTTTAGCTCTATCAACCTTAAT
ACCTTTTTCAGAGATCTGATGCCCCAACACTATTCCTTCTTTCACCATAAAGTGACACTTCTCCTAGTTTAACACCAAGTTAGAATCTTCATACCTTTTC
AGTACTTTGGCCAAATTATCCAAACACTGATCAAAAGAGTCACGTACCACTGATAAATCATCCATGAACACCTCAATAGTTTCCTCCATCAATATAAAAT
CGCATAGAGAATTTGAGTCATATTTAACGTCACTTTACAGTGAGCTCTTTTCACGTTACAGTGACCTAGTTTCCTTTTTACAGTGAAGTTCTTCTTTTAA
CTCATTAACCTCCCAAGTAACCCTCTAGTGATACTTGGTGCAATCCATCACCTTAAGGTCACAAGTAAAACCATACATACAACTTACATAAGCCAACACA
TACTATCATAGAAGTATAATACTTAATAGACACACTTAGGCCAAGAACATAAAAACATTACAGTAAGCTCTTGTCACTATGCATATA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.94046
Expected error %
0.599994
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 135 E Value 3e-45 Identity 71.90% Align. Length 486bp (61.75%) Frame 1
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12085 Score 123 E Value 2e-36 Identity 62.50% Align. Length 486bp (61.75%) Frame 1
reverse transcriptase homolog - fava bean (fragment) dbj|BAA22787.1| reverse transcriptase-like protein [Vicia faba]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0050L11
Clone
Clone name
hba-50l11
LE_HBa0050L11
P050L11
Clone type
BAC
Contamination
none
Estimated length
107,022
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found