Clone Read LE_HBa0197I09_T7_110601

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197I09_T7_110601
Primer
T7
ID from Seq. Facility
LE_HBa_197_I09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
541 trimmed for vector and quality, 1020 raw
Genbank Accession
DU096052
Sequence
>LE_HBa0197I09_T7_110601 (raw untrimmed)
ATAACGTGGTCCCGCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCCAAGGATCATCACTAGTTCTTGTTCAGATTTCCAAGTTAGTTCC
CCTTACAAGCATATGATCCTTGGATCCATCACGCCTTCATGGCCTTCTTACTTATTTCTCCTTGGGGTTTTATGGGAGAAGAGGGCTTAAGTACTATGCC
CTTGTGGCTTCACATACAAATACGCATGAACATTGAAGTGAGTTCACATCTACGTATATTCTATCCACCTTTGCAATCATGATGTACACCACATACCTGT
TCAAAGTATGCATTACGCAAGCGTGCATGGTCACGAGCCTCTTCCCGCATTTCAGAATATATATTTGCTGCAATCTCAACAAAGTCAAAGCACATAGATG
GGCAGAAATTATTTTCCTCAAATGTACATTCAAAATTATATTGGCTGCTTCAGTAAAGAATTACCAACTGCTTCTCCAGTTTCAAGCCAGACCGGAGCTG
CACGTGTGGAACCTCGGCTCTGCAACCCTATCCCCATAAACTCCCCTACTCTGTCCACCATTGTAAGAGCTAGCCAATACAGGTGAATTTTCTCTTTATC
CTATACTATCATCTTTTTTCTCCAGTCTAATTATTACTTTCTTATGTAAGAATCTTGAAATCCATTCTTTTTACATCAAATGCCTATTCTCGATCTTTCT
CCAAAAGGGATTTGAATATCCCTTCTTTTTTAATGGTTGTCCTCTCTTTCACTAGGTCTTTTGTGTCTTATATTTTATTTTATATCTTAGACCAAATTAA
TTGAATTCCTTTTAAAATTATATATCTTAATTATAATTATTTAGATATAAACCACAGCAATCCATAATGTCAATAGCTTTTTAATTCATCAGTTTATGTC
TTCATCTACGCACGTAGTATTTTAAATATGTACTCGTTACTGTGATATATTTTTAGTTACTTGGATTACATAAAAACTAGATACCCTTTTGTTGTAATTC
ATCTCATAAATAATATCCAA
>LE_HBa0197I09_T7_110601 (trimmed for quality and cloning vector)
AGCTTTTCCAAGGATCATCACTAGTTCTTGTTCAGATTTCCAAGTTAGTTCCCCTTACAAGCATATGATCCTTGGATCCATCACGCCTTCATGGCCTTCT
TACTTATTTCTCCTTGGGGTTTTATGGGAGAAGAGGGCTTAAGTACTATGCCCTTGTGGCTTCACATACAAATACGCATGAACATTGAAGTGAGTTCACA
TCTACGTATATTCTATCCACCTTTGCAATCATGATGTACACCACATACCTGTTCAAAGTATGCATTACGCAAGCGTGCATGGTCACGAGCCTCTTCCCGC
ATTTCAGAATATATATTTGCTGCAATCTCAACAAAGTCAAAGCACATAGATGGGCAGAAATTATTTTCCTCAAATGTACATTCAAAATTATATTGGCTGC
TTCAGTAAAGAATTACCAACTGCTTCTCCAGTTTCAAGCCAGACCGGAGCTGCACGTGTGGAACCTCGGCTCTGCAACCCTATCCCCATAAACTCCCCTA
CTCTGTCCACCATTGTAAGAGCTAGCCAATACAGGTGAATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971058
Expected error %
1.35404
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g26280.1 Score 45 E Value 2e-11 Identity 70.40% Align. Length 228bp (42.14%) Frame 1
68415.m03154 smr (Small MutS Related) domain-containing protein weak similarity to PRLI-interacting factor N [Arabidopsis thaliana] GI:11139276; contains Pfam profile PF01713: Smr domain
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197I09
Clone
Clone name
hba-197i9
LE_HBa0197I09
P197I09
Clone type
BAC
Contamination
none
Estimated length
116,542
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found