Clone Read LE_HBa0191E15_SP6_114260

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0191E15_SP6_114260
Primer
SP6
ID from Seq. Facility
LE_HBa_191_E15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
341 trimmed for vector and quality, 887 raw
Genbank Accession
DU070225
Sequence
>LE_HBa0191E15_SP6_114260 (raw untrimmed)
TTTTCCCCCTCTCTTCAATCCACCAACATGATGTATACATCTACGCCCATACAAAGCTTCATTATGGGCCATATGAATGCTGGAATGGTAGTTATTATTG
TAGGCAAACTCAATCAGAGGAAGGTGATCATCCCAATTATCTTTGAAATCGATCACACAAGATCTCATTATATCCTCTAGGGTCTGAATGGTACGCGCTG
CCTGTCCATCCATCTGTGGATGAAATGTTGTTCTAAGGTTAACTTGAGTACCAAGACCCTTCTGAAATGACTTCCTGAAATGAGAGTTTGAACTGAGGAC
CTCTATGTGAGATGATAGACAAATGAATCCCTTGTAACCTCATAATTTCATTTATGTAAAATGTGTCTTAGTCCTTTGCCGAATCTGTATTCTTGACCGC
TAAATTTCGAGAAGACTTATTCATCTTTATCTACTATCACCCATATCTAGTCATGCGTTCTGCAAGTACTTTTGTAACTCTGTGATGAAATTCAAATTGA
TCTCTTCACACTACTATGGTAGGAATAGCGATCTTCCGAGTCATTTTTCCTGGTTTTTGATGTTCTAGAGAGTCGTGCTTGTTAATTGGCGTTTTTTATT
CATTATTTTCTGTAATGGACTGTTATTTTTATATTTTAAATCACTTTTTTTTTTTTCTGTATATTTTAATTATACTTATATTTTTTGATATATATATAAT
ACTTTCAATTTTCTTCTTTTTATTATCTTATTCTATTAATTTTTTTTTTTTTACTCTTCTAATCTTATTGTATATGTTTTACTTATGCTTTTTTTTGTGT
ATATACATATTTTCACTGTTTGTTGTTTTTGTTGCATTCATTTTTATTAATATTTATTTTGTCATTGTTCCCCACTTTACCTACTTA
>LE_HBa0191E15_SP6_114260 (trimmed for quality and cloning vector)
ATCTACGCCCATACAAAGCTTCATTATGGGCCATATGAATGCTGGAATGGTAGTTATTATTGTAGGCAAACTCAATCAGAGGAAGGTGATCATCCCAATT
ATCTTTGAAATCGATCACACAAGATCTCATTATATCCTCTAGGGTCTGAATGGTACGCGCTGCCTGTCCATCCATCTGTGGATGAAATGTTGTTCTAAGG
TTAACTTGAGTACCAAGACCCTTCTGAAATGACTTCCTGAAATGAGAGTTTGAACTGAGGACCTCTATGTGAGATGATAGACAAATGAATCCCTTGTAAC
CTCATAATTTCATTTATGTAAAATGTGTCTTAGTCCTTTGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.942814
Expected error %
0.8181
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 137 E Value 7e-32 Identity 26.00% Align. Length 245bp (71.85%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 137 E Value 7e-32 Identity 26.00% Align. Length 245bp (71.85%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0191E15
Clone
Clone name
hba-191e15
LE_HBa0191E15
P191E15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found