Clone Read LE_HBa0011N20_SP6_121282

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0011N20_SP6_121282
Primer
SP6
ID from Seq. Facility
LE_HBa_011_N20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 619 raw
Sequence
>LE_HBa0011N20_SP6_121282 (raw untrimmed)
AAAAGACTGCTCGCGTATGANANNNNNNNNNNNAANAAAANANAANNAAAAACACAAACGNAGGCTTAGATTCGGCTGCNACGTAACAAGCCCGCACNCA
GTCCTAAATAGATTTCCCTATTAAATTTGTACTCTTGATGATCCTCAATCACAGGATAATAATAGATTCCTCTAATATTCTTCCTTTGAAAAAGGATTTT
GTAGGCCATATGTGTAGGTTAGTCGTGCGTCTTGGCCCTAGTACCGCGATAGAATAGATTGATCCAAAATAGAACCTGGATGGCTCCCCTATCTACAGAT
TTAGATTCTGGATTTGCTTTTAAAGGTCTAAGGGGTTTCTTTTCTCCCTTTGACATTACCAAAAATGATTCATGTCAAAGCTTAGATTAAAAATTTGACG
AGCCTATTTTGACTTACAAGTCTACTTTGGGGATGGAGCCTAATTGGTTGGTCAGTAATGAATGATGCTCAAATTGAAGTCTAAAGAATACCACCATATA
ATTGTGTGAGTATACTGAAAAGTGCTTTTGATGGCAATGAGATCCCGTAAAACTCAAGTGTCCTAAGGGTACCAAAAGATGTAAATTTAGATTATGTGTT
TTCCAGAAGTATTGTTGTT
>LE_HBa0011N20_SP6_121282 (trimmed for quality and cloning vector)
TTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.1366
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0011N20
Clone
Clone name
hba-11n20
LE_HBa0011N20
P011N20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found