Clone Read LE_HBa0168G23_T7_123805

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168G23_T7_123805
Primer
T7
ID from Seq. Facility
LE_HBa_168_G23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
658 trimmed for vector and quality, 794 raw
Genbank Accession
DU053357
Sequence
>LE_HBa0168G23_T7_123805 (raw untrimmed)
ACTTGGAACCCGCGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATTCAGAAGACAACTTATCTCACTTCTGTTTTTCTCATCTTCTGTCAAA
TTTAAGACCCTTTCTACTAATTGTTTCTGAAGGAAAGTGACGTGCTATAGCTTGAAAACTGGTCTTTGTTCTTCCATTTAGCTTGAAGAATTAACTGCTA
TAATATTTCCCATGTCCTGATTGTTCAAGTGCCTTCTGTGTGCATTCTCTCCTTTTTATGTCAGATGCATTCCACGCACATCAGAAATTTCCCTTGATGG
CAAGTTCAGGGAGACAGCGGATGATATCTGAAACAGGCGATTTGAGTAATGAAATTAGTTTTGGAAATGTCAAAGAAATGGATGATGTATATGGCACTGG
GCTAAAGAATGAAGTTGGAGAATACAATTGCTTTCTAAATGTCATTATACAGGTTAGCTGTGTTTACAAGTGCTAATCCATTGTTTTATTTTATAATAGA
CAAATTATCTTTGTTTCTCGCGCTCCCAGTTTTCTTCTATTTCAAGAGCGTTCTCTGATTTTTCTTGTTTTCTCTTCACATTTTAGTCATTGTGGCATCT
AAGACAATTTCGAGACGATTTTTTGCGAATATCATCATCAGAACATGATCATGTGGGTGATCCATGTGTGGTATGTGCTTTATATGAAATATTCACTGCT
TTTGAATCCGGCTTCCATTTGATATGCATAGAAATGCTATTGTCTCCTAACTTCTTTGAGAATTGGCTCTCCTGTATTCCTTTAATCTCGATAG
>LE_HBa0168G23_T7_123805 (trimmed for quality and cloning vector)
AGCTTGATTCAGAAGACAACTTATCTCACTTCTGTTTTTCTCATCTTCTGTCAAATTTAAGACCCTTTCTACTAATTGTTTCTGAAGGAAAGTGACGTGC
TATAGCTTGAAAACTGGTCTTTGTTCTTCCATTTAGCTTGAAGAATTAACTGCTATAATATTTCCCATGTCCTGATTGTTCAAGTGCCTTCTGTGTGCAT
TCTCTCCTTTTTATGTCAGATGCATTCCACGCACATCAGAAATTTCCCTTGATGGCAAGTTCAGGGAGACAGCGGATGATATCTGAAACAGGCGATTTGA
GTAATGAAATTAGTTTTGGAAATGTCAAAGAAATGGATGATGTATATGGCACTGGGCTAAAGAATGAAGTTGGAGAATACAATTGCTTTCTAAATGTCAT
TATACAGGTTAGCTGTGTTTACAAGTGCTAATCCATTGTTTTATTTTATAATAGACAAATTATCTTTGTTTCTCGCGCTCCCAGTTTTCTTCTATTTCAA
GAGCGTTCTCTGATTTTTCTTGTTTTCTCTTCACATTTTAGTCATTGTGGCATCTAAGACAATTTCGAGACGATTTTTTGCGAATATCATCATCAGAACA
TGATCATGTGGGTGATCCATGTGTGGTATGTGCTTTATATGAAATATTCACTGCTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.950349
Expected error %
0.6215
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g47900.1 Score 67 E Value 6e-12 Identity 18.50% Align. Length 167bp (25.38%) Frame 3
68416.m05223 ubiquitin carboxyl-terminal hydrolase family protein contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168G23
Clone
Clone name
hba-168g23
LE_HBa0168G23
P168G23
Clone type
BAC
Contamination
none
Estimated length
72,519
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found