Clone Read LE_HBa0168G23_SP6_263048

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168G23_SP6_263048
Primer
SP6
ID from Seq. Facility
LE_HBa_168_G23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
628 trimmed for vector and quality, 859 raw
Genbank Accession
DU083579
Sequence
>LE_HBa0168G23_SP6_263048 (raw untrimmed)
TTTATCCAGATAGACGAAGACAATTATTCTACGCGAAATAGTAGAACATTGAAATAAACACATGGTTAGAGGTACAAAATATGACTACACTTAACGAGGT
GGAGGTGGAATGATGAATGCAGAAAAACTCATTGCCTCGTTTGAATCATGACGATTCTTCTCATGCACTCTTCTAATGTAATCAGAGGCTCTACCATCCA
CACACTTATCATTAACTGCATACAAGGAGGATTTACCATTTTCAGTTGGCTCAATCAAGTAGGCAACCGGCTTTTTGACATTCACCGGCTTCTGTGACCT
TAAGCTCTCAGGGAATTGTGCTGTTGGTGAGCCTTTGATGAATGTTGCAGGAATTTTACCGCCAGGTGATGGTTCTGTTGCGATTCCCAGGCTCATCCTG
GCAATAGAGAATGACGATAGCCGGATGACATTTGTTACCATCTTCATTGACTTCTCACAGAGGGAGTCGTTGCTTCTGCTTTTGTTCTTCATGGCAAATG
CTACAACTTCTTAACTGCCAAATACTTTCAAGAACAGAGAAGGTGATTGCATATATGACAGGCCAACGACGATGGATATATATAAAGTTTAAAAGAGTAT
AAGCTCAGCTGATTTCTCATTTTTGTTGTTAAAAAAAAAGACAGAATTCTCCCTTAAGTTTCATCCATCCTAACCGTTAATTTTATTATTGCTAAAATTC
CTTTTTCTCCATCCTGGCAATAGAAAGTTTTTCCCCAATTTCCCAAAAGGTCCCAAATGGGAACCCCTAAAAAAATAAAAGGGAATTATTTTGCTGCCTT
TACCTTTTCCTAGGTATCCTTATAAGCCCAAATTTAAAAACTTTTTTGGGAACACTGTT
>LE_HBa0168G23_SP6_263048 (trimmed for quality and cloning vector)
AGATAGACGAAGACAATTATTCTACGCGAAATAGTAGAACATTGAAATAAACACATGGTTAGAGGTACAAAATATGACTACACTTAACGAGGTGGAGGTG
GAATGATGAATGCAGAAAAACTCATTGCCTCGTTTGAATCATGACGATTCTTCTCATGCACTCTTCTAATGTAATCAGAGGCTCTACCATCCACACACTT
ATCATTAACTGCATACAAGGAGGATTTACCATTTTCAGTTGGCTCAATCAAGTAGGCAACCGGCTTTTTGACATTCACCGGCTTCTGTGACCTTAAGCTC
TCAGGGAATTGTGCTGTTGGTGAGCCTTTGATGAATGTTGCAGGAATTTTACCGCCAGGTGATGGTTCTGTTGCGATTCCCAGGCTCATCCTGGCAATAG
AGAATGACGATAGCCGGATGACATTTGTTACCATCTTCATTGACTTCTCACAGAGGGAGTCGTTGCTTCTGCTTTTGTTCTTCATGGCAAATGCTACAAC
TTCTTAACTGCCAAATACTTTCAAGAACAGAGAAGGTGATTGCATATATGACAGGCCAACGACGATGGATATATATAAAGTTTAAAAGAGTATAAGCTCA
GCTGATTTCTCATTTTTGTTGTTAAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975809
Expected error %
0.495077
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX95767.1| Score 267 E Value 1e-70 Identity 33.30% Align. Length 398bp (63.38%) Frame 1
hypothetical protein BB-BA4.13 [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168G23
Clone
Clone name
hba-168g23
LE_HBa0168G23
P168G23
Clone type
BAC
Contamination
none
Estimated length
72,519
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found