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Clone Read LE_HBa0167D14_SP6_12842

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167D14_SP6_12842
Primer
SP6
ID from Seq. Facility
LE_HBa_167_D14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
572 trimmed for vector and quality, 813 raw
Genbank Accession
DU031513
Sequence
>LE_HBa0167D14_SP6_12842 (raw untrimmed)
ACCAAAAAATTCGGTCGCTCCCATAAAAGACTGGCATTTCAAAACCCCTTNCGGGGATGGTCCAGTGGTTTGGGCTTGGAACTTCAAGTTGGAGGTCTCA
AGTTTGAAACCCTTTGCCAGCGAAAACAAGGGGTTTGCCTTCTGGGTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTCTGTTGTATGATTT
GCGAGCTATTGCATCAGAGCGAGGGTTTTACCCTATGCGCACCCAAAGGGTAGAAGCTACGGGTTTCCCTTACTGTTATCAAAAAAATAAAGAGTGGCAT
TTCCATTATCTCTTTGACTGAAAAATCTTTGTAAGTACTTAAAATATTTTTATGACATAAGTCAAAGTTTTGTTTTGGAAGTATAAAAGCACAATACGTA
GCCCGCGTAACAATCACGAAGTTGCAGGAGCACAAGGTGATTAACTGTGAAAAATAGTACTTTTCCCATCATATGGCTGCAGGCCAAATTAACCATGATT
TCAGCACCTGACTTCTATCTGCTTACCGGCATTTTTCTGATCAAGCGCGTTATTGTTATTTTCTTATAACCGAGAAATTCATTGTGGATTAGTTGGACAA
GCCTGGTCCATCAGGTACGGAACTCATAGAAGAATGGGCATGTCCCTCTACCCCGCTCTTACCTTACATGGCCAGGCCCGCGTGGCATTTACTAGGTTTG
AACAGTGATGTGTGTTCAATCTACAACAATTCTTGGTTTCTTATCATTAAACCCCCTCCCCTAGGGGAATAATCGAATTATTTTCCTATATTACTATTTT
CCCCTTAATTTAA
>LE_HBa0167D14_SP6_12842 (trimmed for quality and cloning vector)
TTTCAAAACCCCTTNCGGGGATGGTCCAGTGGTTTGGGCTTGGAACTTCAAGTTGGAGGTCTCAAGTTTGAAACCCTTTGCCAGCGAAAACAAGGGGTTT
GCCTTCTGGGTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTCTGTTGTATGATTTGCGAGCTATTGCATCAGAGCGAGGGTTTTACCCTAT
GCGCACCCAAAGGGTAGAAGCTACGGGTTTCCCTTACTGTTATCAAAAAAATAAAGAGTGGCATTTCCATTATCTCTTTGACTGAAAAATCTTTGTAAGT
ACTTAAAATATTTTTATGACATAAGTCAAAGTTTTGTTTTGGAAGTATAAAAGCACAATACGTAGCCCGCGTAACAATCACGAAGTTGCAGGAGCACAAG
GTGATTAACTGTGAAAAATAGTACTTTTCCCATCATATGGCTGCAGGCCAAATTAACCATGATTTCAGCACCTGACTTCTATCTGCTTACCGGCATTTTT
CTGATCAAGCGCGTTATTGTTATTTTCTTATAACCGAGAAATTCATTGTGGATTAGTTGGACAAGCCTGGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977837
Expected error %
0.471553
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38777.1| Score 81 E Value 1e-14 Identity 25.70% Align. Length 143bp (25.00%) Frame 3
hypothetical protein PGEC858M02.5 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167D14
Clone
Clone name
hba-167d14
LE_HBa0167D14
C08HBa0167D14
P167D14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found