Clone Read LE_HBa0015M08_SP6_129987

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015M08_SP6_129987
Primer
SP6
ID from Seq. Facility
LE_HBa_015_M08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
642 trimmed for vector and quality, 961 raw
Genbank Accession
DU051295
Sequence
>LE_HBa0015M08_SP6_129987 (raw untrimmed)
AATTTTTTGCTTCTAATTTTTCTCGGCAATCCTTAGCATAAGGGGCATTCTCCATAAGATCCCCTTTGCGGGGGGTGTCCAACACCGCTTTGTTGTTATC
ATCCTCCTTCCGAGAGAGANANNCCNNCAGNGACNCANCANCNANNNGGNGANNNGGAACACNNCNCAAGAANGAGGNGAATCTATCCCAAGAACTACTA
ACTGACTCTCCTGGCAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTGCTTGGAGACCGGATAGTAGCGTGCTAAGAAAACATCTCTTAATT
TGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAA
ATCCAAATAAGGCCTCCCTACACAACCTTTACACACTTCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAAGTAGCCCTGAAAACAAACCTCTG
GCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAAAGTATGGCCTGTGGGTAGAGGGGGCAATAGAAGTGGCCCATCCAAGTCTGCTATGTTATCAT
ACCTTCTGTAGTATGCTTGGGGCCGTGGAATGGGATTTTGTCCCCTCTATTGATGTTCACCCGGAGCATTAGGTAACATCTGACCATGAACATCAACTGG
AGCTGGGATGTTCTGGTTCGGATCCTCATCATTTATTTCCAAGTTTCGATTCATATTGCACAGTGTATGCTCTAACTCGTGATCGTAGGGAGACAAGGGT
TCTCTTCCTCTCCGTGTATTTGGCATACAAGGAGGAAAGTAAAATCAAGAAAATATCAACTAAACTATAATAATAGGTCCAAGTTAATCCTAAAACTATA
TTTCCGGCAGTGGCGCCCAATTTTGATAATTTCAACTTACTTTCCAATAAAAGTAAAGCGT
>LE_HBa0015M08_SP6_129987 (trimmed for quality and cloning vector)
ATCTATCCCAAGAACTACTAACTGACTCTCCTGGCAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTGCTTGGAGACCGGATAGTAGCGTGC
TAAGAAAACATCTCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACT
CTGAGACCTATTACATCTAAATCCAAATAAGGCCTCCCTACACAACCTTTACACACTTCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAAGTA
GCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAAAGTATGGCCTGTGGGTAGAGGGGGCAATAGAAGTGGCCCATC
CAAGTCTGCTATGTTATCATACCTTCTGTAGTATGCTTGGGGCCGTGGAATGGGATTTTGTCCCCTCTATTGATGTTCACCCGGAGCATTAGGTAACATC
TGACCATGAACATCAACTGGAGCTGGGATGTTCTGGTTCGGATCCTCATCATTTATTTCCAAGTTTCGATTCATATTGCACAGTGTATGCTCTAACTCGT
GATCGTAGGGAGACAAGGGTTCTCTTCCTCTCCGTGTATTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974541
Expected error %
0.1342
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 100 E Value 2e-20 Identity 17.40% Align. Length 287bp (44.70%) Frame 3
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB18645.1| Score 80 E Value 3e-14 Identity 11.40% Align. Length 359bp (55.92%) Frame 3
unknown [Hordeum vulgare] pir||T06196 hypothetical protein - barley
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015M08
Clone
Clone name
hba-15m8
LE_HBa0015M08
P015M08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found