Clone Read LE_HBa0017C13_SP6_130285

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017C13_SP6_130285
Primer
SP6
ID from Seq. Facility
LE_HBa_017_C13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
692 trimmed for vector and quality, 940 raw
Genbank Accession
DU049542
Sequence
>LE_HBa0017C13_SP6_130285 (raw untrimmed)
CCGGTCTTACTACCTTCTATTCTGCGTTCAACTTATCTCTCTCTTTCTCTTGTTCTTTCTATCTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAG
TGTATCAATTTAAGGATAAAAGATGGCAATAATGCCCCACTAATTAACTTAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCC
ACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCCGACCTCAACTGGGATTGCACAACCTGTGATGGCCCGTC
GCGCCTGCGACGGTCCGTCCTGCTGCCCGTCACAGAGTTCAGAGACTCAATTTCTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCT
GCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTATCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGATGGTCCGTCGTGCCCAT
GACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTACTCAAAACGACTAAACAGGTCGTTACAGAGCGCTTTATGGAT
TTTGATTAAAATATTGTGGTCTAGTGAACCATATAAATAGACCATGACAACATTCATTAAACACATTTCAAGCTTGTCATGAACTGTCATATTTATTAGA
TACCTAAAGGTAATTGCATCTACCACAGGAGAATAATTCTCCTCATAATCAATAGTTAGACCTTTGTGAAAATCCTTGTGCCACAATTCGTGTTTTATAA
TTTACGAACTAACATTTTCATTGCATTTCGTACAAAAAACATTTTATGCCCACTAGCTTGACCCATTCAGGGTGTCGAACTATTGGTCCAAAAATTTCCC
GTTTTTAAATAAAAGCAAATCTGTTGGAATTCTTTTTCCA
>LE_HBa0017C13_SP6_130285 (trimmed for quality and cloning vector)
TCTCTCTTTCTCTTGTTCTTTCTATCTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTGTATCAATTTAAGGATAAAAGATGGCAATAATGCCC
CACTAATTAACTTAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACG
TCCCTTAAAACGTATCAAGAAATCCGACCTCAACTGGGATTGCACAACCTGTGATGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCCCGTCACAGAG
TTCAGAGACTCAATTTCTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAG
TATCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGATGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTT
TTCCAGAATTGAAGTCTGCTACTCAAAACGACTAAACAGGTCGTTACAGAGCGCTTTATGGATTTTGATTAAAATATTGTGGTCTAGTGAACCATATAAA
TAGACCATGACAACATTCATTAAACACATTTCAAGCTTGTCATGAACTGTCATATTTATTAGATACCTAAAGGTAATTGCATCTACCACAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974867
Expected error %
0.1926
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK84483.1| Score 73 E Value 6e-12 Identity 24.80% Align. Length 140bp (20.23%) Frame 1
putative copia-like polyprotein [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017C13
Clone
Clone name
hba-17c13
LE_HBa0017C13
P017C13
Clone type
BAC
Contamination
none
Estimated length
103,058
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found