Clone Read LE_HBa0017P20_T7_130924

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017P20_T7_130924
Primer
T7
ID from Seq. Facility
LE_HBa_017_P20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
604 trimmed for vector and quality, 922 raw
Genbank Accession
DU050089
Sequence
>LE_HBa0017P20_T7_130924 (raw untrimmed)
ATAAATTGGTTCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTAGGAGTTGAAAAAGAGATTGACGACCGCTGCGCTTTGACTTTATC
GGAAGGAACTCAAGGTTTTATGGTGTATCTGATGCTTCAAGAGTTAGTTTGGGCTGCGTGTTTATGTAGAATGACAAGGTTACACTTTATGCCTGTACAC
AGTTGAAGGTTCATGAGAAGAATTATCCAACTCATGACTTAGAATTGGCAGCATTAGTGTTTTCTTAGAAGATATGTTGCCACTACTTGTATGGTGTTCA
TGTTGATATATGCACTTACCACAAGAGCCTCCAATATGTGTTCACTCAGAAAGAACTCAATCTTAGACATAGGATATAGTTGTAATTACTCTAGGATTAT
GACTTAAATATTCTGTACCACTCAGGTAAGGCTAATATGGTTGTCGATGCCTTAAGTAGGTTGTCTATGGGAAGTACTTCCCATGTTTAATAAGGAGAGA
AAGTTAGCAAAAGATATGCACAGACTTACACGTCTGAGAGTCAGATTTATGGATTTTACAAAAAGAGGCATAGTGGTGATGAATGGGGTGAGTCATAATT
ACTTTCAGAGGGTGAAGGAAAACCATGACCAATATCCCATTTAGATTTTGTAGACTAGTGTTCATTATCAATGAGTATTTGCTTTTGAACAATGGGGATC
TAGGGGGCTGAACTACACAGGCTAATGTTTGTACAAAAGATGTGTTAAACTCCCTATTATGTATTTATTTAAGATCCATACATCAATAAATTTCCCTATT
ATATTTTCCCCAATTTCGTTCCACGTTTTGCCAGATGTATATCCCCTATTAGGTCCAATTAAGAAAAGATTTAAGTCAAAGCGTCTGTTTGAATTTTATG
CTCAATTATGTTGTACTTTTGG
>LE_HBa0017P20_T7_130924 (trimmed for quality and cloning vector)
AGCTTTTAGGAGTTGAAAAAGAGATTGACGACCGCTGCGCTTTGACTTTATCGGAAGGAACTCAAGGTTTTATGGTGTATCTGATGCTTCAAGAGTTAGT
TTGGGCTGCGTGTTTATGTAGAATGACAAGGTTACACTTTATGCCTGTACACAGTTGAAGGTTCATGAGAAGAATTATCCAACTCATGACTTAGAATTGG
CAGCATTAGTGTTTTCTTAGAAGATATGTTGCCACTACTTGTATGGTGTTCATGTTGATATATGCACTTACCACAAGAGCCTCCAATATGTGTTCACTCA
GAAAGAACTCAATCTTAGACATAGGATATAGTTGTAATTACTCTAGGATTATGACTTAAATATTCTGTACCACTCAGGTAAGGCTAATATGGTTGTCGAT
GCCTTAAGTAGGTTGTCTATGGGAAGTACTTCCCATGTTTAATAAGGAGAGAAAGTTAGCAAAAGATATGCACAGACTTACACGTCTGAGAGTCAGATTT
ATGGATTTTACAAAAAGAGGCATAGTGGTGATGAATGGGGTGAGTCATAATTACTTTCAGAGGGTGAAGGAAAACCATGACCAATATCCCATTTAGATTT
TGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964364
Expected error %
0.786
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 156 E Value 4e-37 Identity 22.70% Align. Length 356bp (58.94%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 156 E Value 4e-37 Identity 22.70% Align. Length 356bp (58.94%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017P20
Clone
Clone name
hba-17p20
LE_HBa0017P20
C01HBa0017P20
P017P20
Clone type
BAC
Contamination
none
Estimated length
148,468
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found