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Clone Read LE_HBa0020I13_T7_132878

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0020I13_T7_132878
Primer
T7
ID from Seq. Facility
LE_HBa_020_I13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
765 trimmed for vector and quality, 987 raw
Genbank Accession
DU051803
Sequence
>LE_HBa0020I13_T7_132878 (raw untrimmed)
AGGGGTCGGGGCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTTATAACCTCACCACAATGCACATTTGGACTACATACTCTTCTTA
CATAGATGAGAAAAGAAAGGAGGAAGCATATATACGTGAGTTGACAGCTTCAACAACGCAAATCTGAAAGAAGAAGATGGAAGGGAAGTACACGATTTGA
AGATATATTTAGCTTTGGATTCATATTGGAAGCCACAAACAACTTCTCGAGTGAAGAGATGCTCGGAGAGGGTGGTTTTGGGCCTGTTTATAAGGTATAT
TTGTACTATGTTATATGTAGCTCAGAAATTTGCTTAGTACTCTCGCTACATAACGAATCAACTGTAAAAATGGATGACAGGGAAAATTTCCAGATGGGCG
AGAGGTGGCAGTCAAGAGACTTTCAAGAACCTCAGGACAAGGGCTTGTGGAGTTCAAGATAAACTCATACTAATAGCCAGAGTTCAGCATACAAATCTAG
TTCGAGTTCCAGGATGTTGTATTGACGGAGATGAGAGAATGTTGATATACGAGTACATGCCTAACGAGAGCTTGAACTTCTTCTTCTTTGGTCTGTTACT
ATTCCAAAAAAAAGAGAATCAACTTTCAGGTGATTTTTTAAATTTTGATGTGAAATGCTTTCTCTTTAACAGATCCAGCAAGAAGGGAGCTACTGGATTG
GCAGAAACAGTTTGCAGTTATCGAAGGAATTGCTCTATCTCCCCGGATACCTCAGAATGAGAGTGATACATAGAGATCTAAAACCCAGTATTGTGCTTTT
GGGATGAAACATGAATCCTTAAGAAAGTTGGAGTTTGTTTATCAAGATTTTTTACTAAATGAAACGGAGGCAGTGACGGGCAGGGTTGTTGGGCAATAGG
AGTTAACCTTGTCATTCTTCCAAATGATTTTGGGAAACTTGGGACCTTTTCTATTTGCTGAGAAAAAAGTTTCTATCTCTGCCCAGT
>LE_HBa0020I13_T7_132878 (trimmed for quality and cloning vector)
AGCTTGGTTATAACCTCACCACAATGCACATTTGGACTACATACTCTTCTTACATAGATGAGAAAAGAAAGGAGGAAGCATATATACGTGAGTTGACAGC
TTCAACAACGCAAATCTGAAAGAAGAAGATGGAAGGGAAGTACACGATTTGAAGATATATTTAGCTTTGGATTCATATTGGAAGCCACAAACAACTTCTC
GAGTGAAGAGATGCTCGGAGAGGGTGGTTTTGGGCCTGTTTATAAGGTATATTTGTACTATGTTATATGTAGCTCAGAAATTTGCTTAGTACTCTCGCTA
CATAACGAATCAACTGTAAAAATGGATGACAGGGAAAATTTCCAGATGGGCGAGAGGTGGCAGTCAAGAGACTTTCAAGAACCTCAGGACAAGGGCTTGT
GGAGTTCAAGATAAACTCATACTAATAGCCAGAGTTCAGCATACAAATCTAGTTCGAGTTCCAGGATGTTGTATTGACGGAGATGAGAGAATGTTGATAT
ACGAGTACATGCCTAACGAGAGCTTGAACTTCTTCTTCTTTGGTCTGTTACTATTCCAAAAAAAAGAGAATCAACTTTCAGGTGATTTTTTAAATTTTGA
TGTGAAATGCTTTCTCTTTAACAGATCCAGCAAGAAGGGAGCTACTGGATTGGCAGAAACAGTTTGCAGTTATCGAAGGAATTGCTCTATCTCCCCGGAT
ACCTCAGAATGAGAGTGATACATAGAGATCTAAAACCCAGTATTGTGCTTTTGGGATGAAACATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966135
Expected error %
1.414
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g11340.1 Score 55 E Value 2e-15 Identity 44.60% Align. Length 390bp (50.98%) Frame 2
68414.m01302 S-locus lectin protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g11410.1 Score 55 E Value 2e-14 Identity 44.60% Align. Length 390bp (50.98%) Frame 2
68414.m01311 S-locus protein kinase, putative similar to receptor-like protein kinase [Arabidopsis thaliana] gi|4008008|gb|AAC95352; contains S-locus glycoprotein family domain, Pfam:PF00954
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP45176.1| Score 79 E Value 6e-27 Identity 41.30% Align. Length 705bp (92.16%) Frame 1
putative receptor protein kinase [Solanum bulbocastanum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP45167.1| Score 77 E Value 2e-31 Identity 40.60% Align. Length 705bp (92.16%) Frame 1
putative receptor protein kinase [Solanum bulbocastanum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0020I13
Clone
Clone name
hba-20i13
LE_HBa0020I13
P020I13
Clone type
BAC
Contamination
none
Estimated length
102,556
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found