Clone Read LE_HBa0023D04_SP6_134155

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023D04_SP6_134155
Primer
SP6
ID from Seq. Facility
LE_HBa_023_D04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 826 raw
Sequence
>LE_HBa0023D04_SP6_134155 (raw untrimmed)
AAACTTTGCCCCCAGAGGTGAATGGAGGGCTTTGCGTAGCCCGAGTCCGTTACGAAAATCTCCACCCCATGAATTACTGACAGCGAGACCCTTGGGAGGA
GGCCTGAGTCTTTCCAAAGTGGCCGACGCACAAACCTCGCAACTTCTCATCACTGGCATACGCGCAACTCATAAACAGGAGATATGCCTCAGGAATCATC
AGAGGGAAAAAAACAAAACGACAATGGATCGACGAATCCTATCTCGTCCCTTGTTCAAATTAATGGAAATTTGCATCCTCTCGGACGCTAAATCACGATA
AGCTGCCGTCAAGACAAAACAGAGAAAAGGTGAACGAAGACATGAACGAATGTATCACTTGGAACTTGAACAAATG
GAGATGTTCCATTGAGTGACCATT
GTTAAGATTACTTGGAAGAATGTCGGCATGATTGACAAAGGTGAGCGTCAGATCTCAAGGTAAGTCTGGGCTGTTAGTAATTCTCCTCCTAAACATGCAT
CTTGTATAATGTTGGCTGACTACTAAATTACTGGCTTTCTCTCCTGCAGCATCCCTATGTCTACGGAGTCCTGGTGACTGAAGCCTGCGCTACTCTCTCG
GGGCAAAGTGTCTGTCCTCTCCCTCGTAGCAAAAATTGGTGCTGCCACAAATACAATGGCTTGCTCCTAAAAAAACTTGTCCTTAAAAAAGATGTTTGGA
TTATCACATTATAACAAAGTATATCGTCCCTTAAATCTGTACAAAAATTGACAATCTCAGACACACAATTCCAAGGGAATGCTGTTTTCTTTATTGCCTT
TCACCGCTTCATTTTCACAAAGTCTG
>LE_HBa0023D04_SP6_134155 (trimmed for quality and cloning vector)
GAGAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.0151
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023D04
Clone
Clone name
hba-23d4
LE_HBa0023D04
P023D04
Clone type
BAC
Contamination
none
Estimated length
121,308
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found