Clone Read LE_HBa0025I06_T7_135936

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0025I06_T7_135936
Primer
T7
ID from Seq. Facility
LE_HBa_025_I06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
650 trimmed for vector and quality, 966 raw
Genbank Accession
DU045082
Sequence
>LE_HBa0025I06_T7_135936 (raw untrimmed)
TCCCACCCCGGAACCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAGAACGACTCTCCCAATGGAGTGAATTTCTTTTTCTTTGCTTGAT
CTTGAGCATAATTCTGTGTAAGAGGAGAATTATAAGGGACCTGATAGGGTGGCCGTTGCGGGTGAAAGTTTCCTTGAGATGGGGCTCGAAAATATGGGTT
ATTGGGAGGATGCATATATGAGTGAGAATTTAAGACCGTGTATGGAGATGAAGATACTGGATATTGAGGGGCATAAGGGTAGTAATGTTTTAATAGCTAA
GTTGTCCATGAACTGATGTGTAAGGACAATTAGACTTTCTCTAAGCTCCCCTTGACCCTGATACCAGTGAAATAACTTTCTCTTTCCATTTACGATTTCC
AAAACTTGGTAAACCACCTTGAATGGCCTGTGTGGTATCTTTGATTACCACCTGGCTCACGAGCCTTCCTGTTTTGAGACCACTTTCGACCATTTCCCCA
ATTCTGATTGTTGTATGAGACGGTCTTCCCACTGAGGCTGTGAGGTGGTGGGAGTAGTCAAGATCTTGAGCCTCTATGAAGATATCAACCAATTCTTGCT
TATTTTAATGGGGGCTTGACTCGGGCTGCTTGTTCCGTCCATTTTATAGCATTTTTCTATGAAGCTTTCACTTGGTTTTTTTCTTATATTGGATTATTGT
ATTACGATATGGCTTAATGTTTACTTTGTACTGTATTTTCTAAAAAATTTTTGAGTTATATCTCCCCTATTTTCCCACTGTGGATATCTCCTGTATTCTA
TTCATTTTTATGTTATTCTTTTCTGTTTTTCTCTATTTTATTCTGAATTTATTTTCTTTTCCCCTCTCTCCCCGAACCTTATCTTCCTCCTTTTTGTTAT
AGATCGGATCCCCTTTTCTTCTTTATAATATAATTTCCTTTCAATCTTTTCTCCTTCTTTCTTTCN
>LE_HBa0025I06_T7_135936 (trimmed for quality and cloning vector)
AGCTTGAGAACGACTCTCCCAATGGAGTGAATTTCTTTTTCTTTGCTTGATCTTGAGCATAATTCTGTGTAAGAGGAGAATTATAAGGGACCTGATAGGG
TGGCCGTTGCGGGTGAAAGTTTCCTTGAGATGGGGCTCGAAAATATGGGTTATTGGGAGGATGCATATATGAGTGAGAATTTAAGACCGTGTATGGAGAT
GAAGATACTGGATATTGAGGGGCATAAGGGTAGTAATGTTTTAATAGCTAAGTTGTCCATGAACTGATGTGTAAGGACAATTAGACTTTCTCTAAGCTCC
CCTTGACCCTGATACCAGTGAAATAACTTTCTCTTTCCATTTACGATTTCCAAAACTTGGTAAACCACCTTGAATGGCCTGTGTGGTATCTTTGATTACC
ACCTGGCTCACGAGCCTTCCTGTTTTGAGACCACTTTCGACCATTTCCCCAATTCTGATTGTTGTATGAGACGGTCTTCCCACTGAGGCTGTGAGGTGGT
GGGAGTAGTCAAGATCTTGAGCCTCTATGAAGATATCAACCAATTCTTGCTTATTTTAATGGGGGCTTGACTCGGGCTGCTTGTTCCGTCCATTTTATAG
CATTTTTCTATGAAGCTTTCACTTGGTTTTTTTCTTATATTGGATTATTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955126
Expected error %
0.7961
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 83 E Value 2e-16 Identity 36.80% Align. Length 366bp (56.31%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 83 E Value 5e-15 Identity 13.20% Align. Length 287bp (44.15%) Frame 2
putative gag polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0025I06
Clone
Clone name
hba-25i6
LE_HBa0025I06
C01HBa0025I06
P025I06
Clone type
BAC
Contamination
none
Estimated length
95,663
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found