Clone Read LE_HBa0031H12_T7_139740

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031H12_T7_139740
Primer
T7
ID from Seq. Facility
LE_HBa_031_H12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
389 trimmed for vector and quality, 941 raw
Genbank Accession
DU048432
Sequence
>LE_HBa0031H12_T7_139740 (raw untrimmed)
CCCGGGGGGGGATCCTCTAGAAGTCGACCTGCAGGCGGGCAAGCTTATTTCTCATCTGATCCATTTTTTCACGAATCTCATTTGTGGCTGGGTTGTGAGT
GGAGGTGCACTGAGAAGGTGTTTCTCCCGGTATCAGACTTCTTAGTACTCCAAGTTTTATTATTCCGGGAGATTTTCTCTAATTTTTCAACAATATCAGC
ATAAGGACATTTCCCATAAGATCCACCTGCTATATTGTCCAACACCGCTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTTAGTGACTCATCA
TCTATATGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGT
CTTTGTGGTTTAGTTTCTTGGAGACCGGATAGCAGTGTGCTAAGAAGACATCCCTTAGATGGTTCCAAGTGAAGATTGAGTTGCATGGGAGCTCAATGAA
CCACATAACAACCTCTCCCGTCAGTGAGAGAGGAAACACCTTGATACCTATTACATCTAAATTCTAATTAGGCCTCCCCACACAAGCTTTTTCACAATGC
CGTTACCTTAGCTCTCTCGGTTATGAGGAGCCTCAAAACGTAGTCTTGATACATTACACCTTTGTCAATGACCTTCCTCATCCTTTTATATACTACCACC
ATGCCGTCCTGTTGGTCGACGACCTTAGACCAACCGCTCCTCTTACTTAATTTGCTTTATATTTTCTTATTGTTATTATTTCTCTCTTTTCTCTTTTTGC
CTATTCTTTGTTTCTTCTTCTTCGTTCTATCGTTGTAGCTATCTTTTGCTCTGCTGTCTTCTCCTTTTTTTCTTGTATTCGTTCCCTGTTCTTTTTATTG
TTTTTTTTTTTTTATCTTTATTTCTTATTTTCTGTTCAACT
>LE_HBa0031H12_T7_139740 (trimmed for quality and cloning vector)
AAGCTTATTTCTCATCTGATCCATTTTTTCACGAATCTCATTTGTGGCTGGGTTGTGAGTGGAGGTGCACTGAGAAGGTGTTTCTCCCGGTATCAGACTT
CTTAGTACTCCAAGTTTTATTATTCCGGGAGATTTTCTCTAATTTTTCAACAATATCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATATTGTCC
AACACCGCTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTTAGTGACTCATCATCTATATGGTGATTTGGAACACTTCTCAAGAATGAGGTGA
ATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965124
Expected error %
0.3663
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 157 E Value 9e-38 Identity 24.90% Align. Length 296bp (76.09%) Frame 3
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031H12
Clone
Clone name
hba-31h12
LE_HBa0031H12
P031H12
Clone type
BAC
Contamination
none
Estimated length
83,491
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found