Clone Read LE_HBa0036I24_SP6_142115

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036I24_SP6_142115
Primer
SP6
ID from Seq. Facility
LE_HBa_036_I24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
695 trimmed for vector and quality, 901 raw
Genbank Accession
DU046475
Sequence
>LE_HBa0036I24_SP6_142115 (raw untrimmed)
TTGGGGGACAAGCAAATAAGTACCTCTCACCTTATGACTTGAATCTCCTTGTTATCACCAAGCCAAATTCGCCTTTTTTTTGTCTCATCAAACTCCTTAG
ATCCTTTTATTTCACCAACCATGTGATGGGAGCATCCACTATCCACAAACCAAACATCAGTTTTGTAATCTATTGTGGTAGAGTGAGCCATGAAAAGCAC
GTTTTCTTCTTCTTCCTCCTCTTCCTCAGCATAACTAGATTGATCATTTTATACCAAAAGTTAGCTTCTATATGGCCAAACCTATTACACTTCTAACACT
GCACTCAACTTCAGCGCCTATTTGTCCACCCAGATTGGCTTGTGCCTCTACCACGTCCTCTACCTCTAAAAGAGCCTCTGCCACGTCCTCGAGTTCCTTG
TTCTAACGACTTCTGATTTTTAATTGGATTCTCTTCTTTCACTTGAAAATGCTTGTTCTTGAGTTGTCGCTATTGACTTATTGATCCGTGACTCATGAGA
TTGCAAAGATCCCATTAGTTCATTAAATGAAAACATAGATAAATCTCTTAATTCCTCTATCGCTGCAACCACATGATCAAACTTTATAGGTAAACTTCTT
AAAACTTTTGGAACTAAAATTTTATCACCTATATCTTGACCGTATGATTTCAATTGACTTACAATTCCACTAACTCTTGATAAAAAGCCTTGCACAGATT
CATTGTTATTCATGGAACATGTTTCAAAATCACGACGAAGAGATTGTCGTTTCACAGTTAATTACCTTTGAAGAACCTTGTAACTCAGTTTTCAAAATCA
GCCAAGATATCTTGAGGTAGTAGCAGCTAAATTCTTGAAAAGATTGCTTATGAATAACTTGCGAAATAAAAAAATAAATTTGAACCTTCTTTATATTTCT
T
>LE_HBa0036I24_SP6_142115 (trimmed for quality and cloning vector)
GACTTGAATCTCCTTGTTATCACCAAGCCAAATTCGCCTTTTTTTTGTCTCATCAAACTCCTTAGATCCTTTTATTTCACCAACCATGTGATGGGAGCAT
CCACTATCCACAAACCAAACATCAGTTTTGTAATCTATTGTGGTAGAGTGAGCCATGAAAAGCACGTTTTCTTCTTCTTCCTCCTCTTCCTCAGCATAAC
TAGATTGATCATTTTATACCAAAAGTTAGCTTCTATATGGCCAAACCTATTACACTTCTAACACTGCACTCAACTTCAGCGCCTATTTGTCCACCCAGAT
TGGCTTGTGCCTCTACCACGTCCTCTACCTCTAAAAGAGCCTCTGCCACGTCCTCGAGTTCCTTGTTCTAACGACTTCTGATTTTTAATTGGATTCTCTT
CTTTCACTTGAAAATGCTTGTTCTTGAGTTGTCGCTATTGACTTATTGATCCGTGACTCATGAGATTGCAAAGATCCCATTAGTTCATTAAATGAAAACA
TAGATAAATCTCTTAATTCCTCTATCGCTGCAACCACATGATCAAACTTTATAGGTAAACTTCTTAAAACTTTTGGAACTAAAATTTTATCACCTATATC
TTGACCGTATGATTTCAATTGACTTACAATTCCACTAACTCTTGATAAAAAGCCTTGCACAGATTCATTGTTATTCATGGAACATGTTTCAAAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95016
Expected error %
0.2688
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38758.1| Score 114 E Value 2e-24 Identity 20.20% Align. Length 281bp (40.43%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_475746.1| Score 85 E Value 2e-15 Identity 14.90% Align. Length 281bp (40.43%) Frame 2
putative polyprotein [Oryza sativa (japonica cultivar-group)] gb|AAT47077.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036I24
Clone
Clone name
hba-36i24
LE_HBa0036I24
P036I24
Clone type
BAC
Contamination
none
Estimated length
130,281
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found