Clone Read LE_HBa0036I24_T7_142116

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0036I24_T7_142116
Primer
T7
ID from Seq. Facility
LE_HBa_036_I24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
755 trimmed for vector and quality, 936 raw
Genbank Accession
DU046476
Sequence
>LE_HBa0036I24_T7_142116 (raw untrimmed)
CAAGACCGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAGAACAAATTCTTTGTTACTTGCAATGAGCTCCTTGACGTGGCATAT
TGGATGGAAATCATGGTCATACTAGTGTAGAGTGCTTTGCTGATGCTGATTGAGCGGGATCTAAAATTGATATAAGATCCACAACAGGCTATGGTGTTTT
TGTTGGAGGGGAAATAGTATCATGGAGAAGTAAGAAACAAAGTGTTGTATCTCGATCTAGTGGTGAATTTAATTATAGAGCTATGTCATAGTCTACGTGT
GAGATTATATGGATATATCATCTATTATCTGAAATTGGAGTGAAGCATTATACACTAGCAAAACTCTGGTGTGACAATCAGGTTGTTATTCATATAGCCT
CAAATTCGGTGTATTATGAAAGGACTAAACACATTAAGGTTGACCGTCATTTTATTCGTCAGAAGATTCAGGATAATTTGATTTCCACAGGCTACGTGAA
AACGGGGGAGAAATTAGGTGATTTGTTCATCAAGGAATTGAATGGAACTCGAGTTAGTTATTTTTGTGACAAGATGGGCGCGATCAATATCTATGCTTCA
GCTTGAGGGGGCGTATTACAGAATATGGTAGCAAATCACAAAGTGATTCTTGAATATTACAGAATAATAAGAGTTATTGTAGACTATTTTCTTTTATTTG
TTTTGATTGATTTCCTTTTATAAGATTCCCTGTAATTGTATAAATAGCTTGTATAATCATGAACAGAAAACAATTTTCTTCATTTCATTACACCCACAAA
TCCTAAGCACAATAAAACCTATAGTGATAACTTTGTCTATGTTGAACCTGCAAAATCATAAGTTAATTTATCATCTAATGGATGGTTCCCTAATAGATAA
ATTCCCCCGGCAACTGGGTCACTTACAGGGTATGTT
>LE_HBa0036I24_T7_142116 (trimmed for quality and cloning vector)
AGCTTTAGAACAAATTCTTTGTTACTTGCAATGAGCTCCTTGACGTGGCATATTGGATGGAAATCATGGTCATACTAGTGTAGAGTGCTTTGCTGATGCT
GATTGAGCGGGATCTAAAATTGATATAAGATCCACAACAGGCTATGGTGTTTTTGTTGGAGGGGAAATAGTATCATGGAGAAGTAAGAAACAAAGTGTTG
TATCTCGATCTAGTGGTGAATTTAATTATAGAGCTATGTCATAGTCTACGTGTGAGATTATATGGATATATCATCTATTATCTGAAATTGGAGTGAAGCA
TTATACACTAGCAAAACTCTGGTGTGACAATCAGGTTGTTATTCATATAGCCTCAAATTCGGTGTATTATGAAAGGACTAAACACATTAAGGTTGACCGT
CATTTTATTCGTCAGAAGATTCAGGATAATTTGATTTCCACAGGCTACGTGAAAACGGGGGAGAAATTAGGTGATTTGTTCATCAAGGAATTGAATGGAA
CTCGAGTTAGTTATTTTTGTGACAAGATGGGCGCGATCAATATCTATGCTTCAGCTTGAGGGGGCGTATTACAGAATATGGTAGCAAATCACAAAGTGAT
TCTTGAATATTACAGAATAATAAGAGTTATTGTAGACTATTTTCTTTTATTTGTTTTGATTGATTTCCTTTTATAAGATTCCCTGTAATTGTATAAATAG
CTTGTATAATCATGAACAGAAAACAATTTTCTTCATTTCATTACACCCACAAATC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.948654
Expected error %
0.5164
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 82 E Value 2e-16 Identity 10.60% Align. Length 416bp (55.10%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO26684.1| Score 238 E Value 1e-61 Identity 21.10% Align. Length 548bp (72.58%) Frame 3
gag-pol polyprotein [Vitis vinifera]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO26690.1| Score 235 E Value 1e-60 Identity 20.70% Align. Length 554bp (73.38%) Frame 3
gag-pol polyprotein [Vitis vinifera]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0036I24
Clone
Clone name
hba-36i24
LE_HBa0036I24
P036I24
Clone type
BAC
Contamination
none
Estimated length
130,281
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found